Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30498g00004 ATGAGAAAGAAAGTGGAGCTCAAATACATAGCAAATGACTCAAAAAGAAGGGCAACACTGAAGAAAAGAAAAAGTGGCCTGATAAAAAAGGTTGATGAGATTAGCACTCTTTGCGGGGTTGATGCGTGTGCTATAATGTACACCCCCAACGATCCACGGCCAGAGGTATGGCCGTCGCCGTCGGAAGTGACCCGGATGATCGCTAGGTTTAAGGAAATGCCCGAGTTGGAACAGGGCAAGAAGATGATGTCTCAGGAGAGTTTCTTAAGACAGCGGATTCAGAAAGCCCAAGATCACTTGAAAAAATTAAAGAATGAGAATAGAAAGAAAGAGATGAGCAATCTCATGTTCCAAGCCTTAGCTCATGGTGGTAGCTCCCAGCTTCTTGAAAATGCCACCATGATTGATCTCAATGATCTTGCATGGGTCATTGACCAAAATATCAAGGAGATCAACAAGAAAATTAGCAGGCTTGAAGGACAAGAAGGGACTAGTAGTAACAATAATAATGGAGGAGTGGAGAATAACGTCATGAATAATGGAGGAGTGGACAATAATGTCATGAATGGTGATGGTGTGTTTCCATTTGTTGATGCTGCTAATGATGTCCAAGATGATTATCGCCCTGCCCCATTAGATCCTTGA 645 0.4279 MRKKVELKYIANDSKRRATLKKRKSGLIKKVDEISTLCGVDACAIMYTPNDPRPEVWPSPSEVTRMIARFKEMPELEQGKKMMSQESFLRQRIQKAQDHLKKLKNENRKKEMSNLMFQALAHGGSSQLLENATMIDLNDLAWVIDQNIKEINKKISRLEGQEGTSSNNNNGGVENNVMNNGGVDNNVMNGDGVFPFVDAANDVQDDYRPAPLDP 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30498g00004 214 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 9 51 IPR002100 GO:0003677|GO:0046983
Stsc30498g00004 214 ProSiteProfiles MADS-box domain profile. 1 50 IPR002100 GO:0003677|GO:0046983
Stsc30498g00004 214 CDD MADS_SRF_like 1 84 IPR033897 GO:0000981|GO:0000987|GO:0045944
Stsc30498g00004 214 PRINTS MADS domain signature 22 37 IPR002100 GO:0003677|GO:0046983
Stsc30498g00004 214 PRINTS MADS domain signature 2 22 IPR002100 GO:0003677|GO:0046983
Stsc30498g00004 214 Coils Coil 86 113 - -
Stsc30498g00004 214 FunFam agamous-like MADS-box protein AGL80 12 96 - -
Stsc30498g00004 214 MobiDBLite consensus disorder prediction 159 184 - -
Stsc30498g00004 214 Gene3D - 12 120 IPR036879 GO:0003677|GO:0046983
Stsc30498g00004 214 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 161 - -
Stsc30498g00004 214 SMART madsneu2 1 59 IPR002100 GO:0003677|GO:0046983
Stsc30498g00004 214 SUPERFAMILY SRF-like 2 94 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30498g00004 Stsc-Chr30498 18771 20919 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30498g00004 2 177 Type I MADS-box Gene Family AT5G48670 48.603 9.12e-48 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Stsc30498g00004 SRF-TF 9.3e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30498g00004 - - aip:107644294 289.656