Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30498g00003 ATGAACACTGACATTTCAGGCTGGGTTGCGGAATTCCACCTCCGTAGTTCCGCCCCTGACTCCCTCGTCTCCAAGATCCTTAAAGTCCTTGACCTCTCCGCCGCCGATCCCAACCTTAAGAAAACCCTCCTCCTCCGCACCCTCCGATCCCAACTCTCCAATGCCTCAATCACCGAAACCGCTCTCGACATTCTTGAGCAAATCGAAGAGATTGACCGAAACGAAGCCGTTCCCATCCTTGATTCCATGCGCAGAGCCTACTGCGCCGTCGCCGTCGAGTGCACCGTTAAGTACCTCGCTGCCTCCTATGACGGAACCCCCGGCGGTGAATACTTATCCGCCGTGACGCGTATCTGGCGCGGCCGCGTGGAGGAGTTGGTGCACCGCCGGAGCGAGTTGTTATCCGGCGAGATTGCGCAGTGGAGGGATGACATTGAGGCTGCGCTTTTTGACACTAGGGTTTCTGAGAGGTTGGCGAAGTTGAATACGCGAAACGACGCGTTTTCTGAGGTTAGGTCTTATCTGCAGGAAGTTTGGGAAACGATGGGTCCTTCTTTTCTTGAATCGGTAGCGGAAAGGGCCAAGAGAAAGAGGAAGGACAAAGGGAAAGGATCGACGAATCTGGTTTTGAATCCGGTGCCGGAGACTGTAGTGAAATGGTGCACTACAGGTGTTTGCGGAAATGCCTCTGGTGCTGAACAGGCGAGGGATCATGATAATGACAATGATGATGACGACAATGATGGTGCACATTGCATGGAGGGTGTAGAGGCGAATGGTAGCCATGGGGGGAAGGAAGAGTTGGAGAAGAGAGGTGAAGGTTCTGTTGATGGAACTCGGGAGCCTGCAAAGGAGAAGAAAGCAAGAGGCAATCCTCAACTTCAACGCAAGCTCCCTGCATTTCGTAGATGCCATAGAGGAGTAAAAATGTCTAGTGCTGAGGAAGTGGGCACAGAAAGTTCATGGAGAAAAAAGGATACTGTGTTAAGTGCCGAAGTTAAAACAGCCCGGGAATCTCTTAAATCAGGTTTTTCGGAGCTACGAGCATTGGTCAATGATCCTCTTCCTGAGGCATTGGATATATCTGATGCTGTTAGATCTAAACTTGCACAGAAAGGTACAAATCGTGAACAACCCATGGAAAACCAGAGTGGAGATGTAGATGTACCAAACTCAAATACTTGCAGGACTATTGTTCTTTATGAAGCTAAAGATGCTGATCATGAGAAGTCGTCTTCTGTTCGTCATAGTAGAGTTAAAGTTGAACGTCCCAATTTAATGGAGCAGAACAATACTGCTCGTCAAAGTCCCAGTTTTATGAAGCCGAATGGTACTGCTCATACTTATGAGTGGAATGATTCAATAGATAACATGCCCGTCGGAATGCAACTAAGAAGGAAGAAAAGAAAATGGTCTTCATTGGAAGAAGAGACACTAAGAACTGGTGTTGAAATGTTTGGCGTCGGAAACTGGAAAACAATTCGAAGTTTTTACAGTGACATATTTGAACATAGACTAGCAGTTGACTTGAAGGACAAGTGGAGGAACATGACGCGGTACTGA 1563 0.4811 MNTDISGWVAEFHLRSSAPDSLVSKILKVLDLSAADPNLKKTLLLRTLRSQLSNASITETALDILEQIEEIDRNEAVPILDSMRRAYCAVAVECTVKYLAASYDGTPGGEYLSAVTRIWRGRVEELVHRRSELLSGEIAQWRDDIEAALFDTRVSERLAKLNTRNDAFSEVRSYLQEVWETMGPSFLESVAERAKRKRKDKGKGSTNLVLNPVPETVVKWCTTGVCGNASGAEQARDHDNDNDDDDNDGAHCMEGVEANGSHGGKEELEKRGEGSVDGTREPAKEKKARGNPQLQRKLPAFRRCHRGVKMSSAEEVGTESSWRKKDTVLSAEVKTARESLKSGFSELRALVNDPLPEALDISDAVRSKLAQKGTNREQPMENQSGDVDVPNSNTCRTIVLYEAKDADHEKSSSVRHSRVKVERPNLMEQNNTARQSPSFMKPNGTAHTYEWNDSIDNMPVGMQLRRKKRKWSSLEEETLRTGVEMFGVGNWKTIRSFYSDIFEHRLAVDLKDKWRNMTRY 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30498g00003 520 MobiDBLite consensus disorder prediction 231 297 - -
Stsc30498g00003 520 MobiDBLite consensus disorder prediction 260 292 - -
Stsc30498g00003 520 Gene3D - 471 520 - -
Stsc30498g00003 520 ProSiteProfiles Myb-like domain profile. 463 518 IPR001005 -
Stsc30498g00003 520 PANTHER MYB TRANSCRIPTION FACTOR 1 520 - -
Stsc30498g00003 520 SUPERFAMILY Homeodomain-like 465 519 IPR009057 -
Stsc30498g00003 520 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 465 520 IPR017930 -
Stsc30498g00003 520 SMART sant 467 520 IPR001005 -
Stsc30498g00003 520 CDD SANT_TRF 469 519 - -
Stsc30498g00003 520 MobiDBLite consensus disorder prediction 370 391 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30498g00003 Stsc-Chr30498 6808 10656 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30498g00003 471 517 Single Myb Histone (SMH) Gene Family AT1G15720 48.936 4.75e-06 47.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Stsc30498g00003 Myb_DNA-binding 2.5e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30498g00003 - - ahf:112794013 717.227