Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Stsc30497g00005 | ATGGCGGCCACAGGCATACCTTCCTCCTTCTTTTCTTCTTCAATCAACACCACTTCCTTCCCTTCCAAAACCATAACAGACCCTCCTCCTCCTCTCATACCAATATCCTCAAACAACCGCAGGCTATCATCATCATCATTATCATCACACTCACAACAATGCTATTACTACTTTCTGGAACCTTTCTCATCAATTGGTGGTGGTGCTACCAAGTTGTGGGTGCCTAGAACTAGAACTACTTCACCAGCTGTTGTTGTTTCTCAACAAGAGTTTGCAGTGTCTGATGATGCTGCTGGCTTAGTTGAAGAGGAAAAAGAAGAAGAAGAAGAAGAAGAGCAACAAGATGGTTCTGCTGCTGAATCCTCTGTCAGCACTAAGCTTTATTTTGGGAATTTGCCGTACAGTGTTGACAGTGCACAACTTGCAGGGATAATTGAGGCTTATGGCAGTGCAGAACTAATTGAGGTTCTCTATGACAGGGACACTGGAAAAAGCAGAGGCTTTGCATTCGTGACGATGAGTTGCATTGAAGATTGTAATGCAGTAATCGAAAATCTTGATGGAAAAGACTTCTTGGGCCGAACCTTACGAGTAAACTTCGCCGACAAACCAAAACCAAAAGAACCGCTGTACCCTGAAACTGAGTACAAGCTATTTGTTGGAAACCTGTCGTGGACGGTAACTTCGGAGAGCCTCACGGAAGCGTTTCAAGAATATGGAAATGTGGTCGGAGCTAGGGTCTTATATGACGGCGAAACAGGAAGGTCACGCGGCTATGGCTTCGTTTGCTTTTCGACCAAGGCGGAAATGGAAGCTGCCCTTACATCCCTGAATGATATGGAACTCGAGGGACGGGCAATGCGTGTAAGCTTGGCGCAAGGAAAGCGTTCGCAAGGTTAA | 900 | 0.4578 | MAATGIPSSFFSSSINTTSFPSKTITDPPPPLIPISSNNRRLSSSSLSSHSQQCYYYFLEPFSSIGGGATKLWVPRTRTTSPAVVVSQQEFAVSDDAAGLVEEEKEEEEEEEQQDGSAAESSVSTKLYFGNLPYSVDSAQLAGIIEAYGSAELIEVLYDRDTGKSRGFAFVTMSCIEDCNAVIENLDGKDFLGRTLRVNFADKPKPKEPLYPETEYKLFVGNLSWTVTSESLTEAFQEYGNVVGARVLYDGETGRSRGYGFVCFSTKAEMEAALTSLNDMELEGRAMRVSLAQGKRSQG | 299 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Stsc30497g00005 | 299 | CDD | RRM2_NsCP33_like | 217 | 292 | - | - | |
| Stsc30497g00005 | 299 | SMART | rrm1_1 | 217 | 290 | IPR000504 | GO:0003723 | |
| Stsc30497g00005 | 299 | SMART | rrm1_1 | 126 | 199 | IPR000504 | GO:0003723 | |
| Stsc30497g00005 | 299 | PANTHER | OS02G0815200 PROTEIN | 33 | 296 | - | - | |
| Stsc30497g00005 | 299 | MobiDBLite | consensus disorder prediction | 1 | 41 | - | - | |
| Stsc30497g00005 | 299 | Gene3D | - | 210 | 299 | IPR012677 | - | |
| Stsc30497g00005 | 299 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 216 | 294 | IPR000504 | GO:0003723 | |
| Stsc30497g00005 | 299 | Gene3D | - | 86 | 209 | IPR012677 | - | |
| Stsc30497g00005 | 299 | FunFam | 31 kDa ribonucleoprotein, chloroplastic | 84 | 206 | - | - | |
| Stsc30497g00005 | 299 | MobiDBLite | consensus disorder prediction | 100 | 116 | - | - | |
| Stsc30497g00005 | 299 | Coils | Coil | 94 | 114 | - | - | |
| Stsc30497g00005 | 299 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 125 | 203 | IPR000504 | GO:0003723 | |
| Stsc30497g00005 | 299 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
| Stsc30497g00005 | 299 | MobiDBLite | consensus disorder prediction | 96 | 122 | - | - | |
| Stsc30497g00005 | 299 | SUPERFAMILY | RNA-binding domain, RBD | 211 | 296 | IPR035979 | GO:0003676 | |
| Stsc30497g00005 | 299 | FunFam | 28 kDa ribonucleoprotein, chloroplastic | 207 | 298 | - | - | |
| Stsc30497g00005 | 299 | SUPERFAMILY | RNA-binding domain, RBD | 117 | 208 | IPR035979 | GO:0003676 | |
| Stsc30497g00005 | 299 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 127 | 197 | IPR000504 | GO:0003723 | |
| Stsc30497g00005 | 299 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 218 | 287 | IPR000504 | GO:0003723 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Stsc30497g00005 | Stsc-Chr30497 | 14666 | 17639 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Stsc30497g00005 | 105 | 295 | Eukaryotic Initiation Factors Gene Family | AT2G23350 | 34.146 | 3.64e-19 | 85.9 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Stsc30497g00005 | - | - | adu:107464158 | 378.252 |