Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30495g00007 ATGGCGGAGGCGGCGAAGAAAGTGGTGGCGGAGGCGGAGGAGCTTCCCAGGACTATCGTGCGCCGCGTCGTGAAGGATAAGCTCTCTCGATGCTCCGAAGACGGAGACATATCCGTGAACAAAGACGCACTTGTGGCATTCTCTGAAAGCGCTAGGATCTTTATCCACTACATTTCCGCAACAGCTAATGACATTTGTAAGGAGTCAAAGAGGCAGATTATCAGCGCTGAGGATATTTTCAAAGCTCTTGAAGAAACAGAATTCTCCGAGTTTATCCGCCCTCTTAAAGCTTCTCTTGAAGACTTCAGGAAGAAGAATGCTGGAAAGAGAGCAGTAGTGTCAAAAGAAAAGGAAATTGAGAAGAACAAGAAAAGGAAGGTGGAAGGTGAGCAATCTGATAAAGTGGAGTCATCTGATAAGGGGGGGTCACAGTCACCTCAGAAAGGGGAAAGTGATGACGGCGAATGA 468 0.4765 MAEAAKKVVAEAEELPRTIVRRVVKDKLSRCSEDGDISVNKDALVAFSESARIFIHYISATANDICKESKRQIISAEDIFKALEETEFSEFIRPLKASLEDFRKKNAGKRAVVSKEKEIEKNKKRKVEGEQSDKVESSDKGGSQSPQKGESDDGE 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30495g00007 155 FunFam DNA polymerase epsilon subunit 3 7 148 - -
Stsc30495g00007 155 MobiDBLite consensus disorder prediction 113 137 - -
Stsc30495g00007 155 SUPERFAMILY Histone-fold 15 135 IPR009072 GO:0046982
Stsc30495g00007 155 Coils Coil 66 86 - -
Stsc30495g00007 155 Gene3D Histone, subunit A 6 155 IPR009072 GO:0046982
Stsc30495g00007 155 PANTHER DNA POLYMERASE EPSILON SUBUNIT 3 9 149 - -
Stsc30495g00007 155 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 14 83 IPR003958 -
Stsc30495g00007 155 MobiDBLite consensus disorder prediction 113 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30495g00007 Stsc-Chr30495 32438 34024 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30495g00007 15 103 CCAAT-HAP3 Transcription Factor Family AT4G14540 30.337 1.31e-09 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Stsc30495g00007 CBFD_NFYB_HMF 1.4e-09 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30495g00007 K02326 - gmx:100306382 216.853