Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30494g00014 ATGGTTATGGCTTCCTTTAGCCTCCAAAAAAACAAGCATTCTCTTTCCACTGTGATCCGTTTCTTCAAGATTGTTCTCAGAAAAAGCCTTGAAGATGGATATCTTAAAATACCAAACAAGTTCAGTAAGAAATATGGTGATGATATGCCAAATCCAGTGAATCTGAAGCCTCCAGATGGCACTCAATGGAAAATAGATTGGACTAATCATGATGGTGAGATTCTCTTTGAAAAGGGTTGGAAAGAGTTTGCTAAATTTTACACTTTGGATAATGGTCATTTGCTGTGGTTTGAGTATGATGGAACTTCTAACATCAAAGTACACATACTTGACATGAGTGGCCTAGAAATCGATTATCCTTCCAACGATCGAATCGTGGATGACGACGTGGTTGATATTTTGGATGAACCACCACGAAGACGCCGAGGCCGGCCAAGGAAAAAAGTGAAAGCAGAACAACCAAAGCAATCATGTCCTTCTAAAAGTAAAGTATCCAAAAGTGCCATAAAAACTGAAGTAGTTGTGGAGAGAAACCTCAATGAACAAAACTTGAAGCAGCATGTCAAGAATGAAGAAGATAGTCAATCTGAAGAGACAGCAGAGTTTAAGCTTCCAATAATTCAATGCTGCAAACCAGATATAGATGTTGTTAGAGAAGCAAGGAAGTTCAAGTCAAAAAATCCTTCTTTCATAATCAAGATTAAGCAAATTCACCAAACAGGATCACCAGCAAGTTTTCCAGTTAGCTTCTTCAGATTGTACTTCGAGAATTCGAAGCAGATTGCAAGTCTACATGTTGGAAAGAAGCAGTGGCCTGCAACATTCATCCATTATCCATATAAGAAAAGTGCCCTTATCTCGTGCTGGCGCGTGTTCATTAGAGAAAATAACATAAAAGCCGGAGATGTTTGTATCTTTGAGCTCATTAACAGAGAAGATCTAGAGCTTAAGGTTCATATTCGTCGAAGCCACGAATTAGCAAATTTCAGAAGCTCTTGA 999 0.3864 MVMASFSLQKNKHSLSTVIRFFKIVLRKSLEDGYLKIPNKFSKKYGDDMPNPVNLKPPDGTQWKIDWTNHDGEILFEKGWKEFAKFYTLDNGHLLWFEYDGTSNIKVHILDMSGLEIDYPSNDRIVDDDVVDILDEPPRRRRGRPRKKVKAEQPKQSCPSKSKVSKSAIKTEVVVERNLNEQNLKQHVKNEEDSQSEETAEFKLPIIQCCKPDIDVVREARKFKSKNPSFIIKIKQIHQTGSPASFPVSFFRLYFENSKQIASLHVGKKQWPATFIHYPYKKSALISCWRVFIRENNIKAGDVCIFELINREDLELKVHIRRSHELANFRSS 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30494g00014 332 CDD B3_DNA 245 322 IPR003340 GO:0003677
Stsc30494g00014 332 Gene3D - 213 326 IPR015300 -
Stsc30494g00014 332 Gene3D - 16 114 IPR015300 -
Stsc30494g00014 332 CDD B3_DNA 20 111 IPR003340 GO:0003677
Stsc30494g00014 332 MobiDBLite consensus disorder prediction 136 168 - -
Stsc30494g00014 332 ProSiteProfiles B3 DNA-binding domain profile. 269 324 IPR003340 GO:0003677
Stsc30494g00014 332 Pfam B3 DNA binding domain 21 111 IPR003340 GO:0003677
Stsc30494g00014 332 Pfam B3 DNA binding domain 245 323 IPR003340 GO:0003677
Stsc30494g00014 332 ProSiteProfiles B3 DNA-binding domain profile. 20 113 IPR003340 GO:0003677
Stsc30494g00014 332 SUPERFAMILY DNA-binding pseudobarrel domain 18 113 IPR015300 -
Stsc30494g00014 332 SUPERFAMILY DNA-binding pseudobarrel domain 223 323 IPR015300 -
Stsc30494g00014 332 PANTHER B3 DOMAIN-CONTAINING 13 312 - -
Stsc30494g00014 332 SMART B3_2 230 324 IPR003340 GO:0003677
Stsc30494g00014 332 SMART B3_2 21 113 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30494g00014 Stsc-Chr30494 53055 54898 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30494g00014 21 326 B3 DNA Binding Superfamily AT3G18990 23.631 2.14e-29 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc30494g00014 B3 4.9e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30494g00014 - - aip:107621185 464.151