Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30494g00013 ATGACTTCCAATGCAGTCCTTTTCTTCAAGATTATGCTCTCAAAATCTCTTCAACAAGGGATACTTAACCTCCCAAAGAAATTCACTAGAAAATATGGTGATTCTCTATCAAACCCTGTGTTTCTCAAGCCTCCTGATGGAACTGAATGGAAAGTAGATTGGACCATGCATGATGCACAGATTCTGTTTGAAGATGGTTGGAAAGAGTTTGTTGCATATTACTCTATAAAGCATGGTCATTTCTTGATGTTTGAATACTATGGAAATTCCCAATTTGGGGTACAAATATGTGACATGAGTGGCCTTGAAATAGAGTATCCTTTCAATGTTAATCAGCAAGAAAAGGATAACATTGATGAGATCAGTGATAAAGCAGTTCAAGTGTTCGATGAAACGCCTCAAAGACAAAACAATAGAAGGAAATCATCAATGTCTCAGCTTGATCAAAGCAATGATAGAAAGGAAACTCAAACGAGTTCAAATGATGCTCTGGAGGAAGCTAAGAAATTCACCTCAGAAAATCCCTTTTTCATCATAACTATAACAAAAAAACTTCTGGACCTATGCAGACCGAGTGTGCCAATTGACTTCACCAAAAGGTACCTCAAAGAAAAGAAGATTGCCAAGGTAAGGTTTAGGAAGAAATTGTGGCCTATGAAATTTCTGCGTAGCAATCAGTCAATCCGTTTGTCAACTGGTTGGAACCTGTTTGTTAAAGCAAGTAAATTGCAAGCTGGAGATGTTTGCATCTTTGAGCTGATCAACATGAAAGATGCAGAGTTTGATGTTCACTTCTTTAGGTGTCACCACCCATAA 816 0.3775 MTSNAVLFFKIMLSKSLQQGILNLPKKFTRKYGDSLSNPVFLKPPDGTEWKVDWTMHDAQILFEDGWKEFVAYYSIKHGHFLMFEYYGNSQFGVQICDMSGLEIEYPFNVNQQEKDNIDEISDKAVQVFDETPQRQNNRRKSSMSQLDQSNDRKETQTSSNDALEEAKKFTSENPFFIITITKKLLDLCRPSVPIDFTKRYLKEKKIAKVRFRKKLWPMKFLRSNQSIRLSTGWNLFVKASKLQAGDVCIFELINMKDAEFDVHFFRCHHP 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30494g00013 271 CDD B3_DNA 175 267 IPR003340 GO:0003677
Stsc30494g00013 271 MobiDBLite consensus disorder prediction 131 165 - -
Stsc30494g00013 271 ProSiteProfiles B3 DNA-binding domain profile. 176 269 IPR003340 GO:0003677
Stsc30494g00013 271 PANTHER B3 DOMAIN-CONTAINING 4 263 - -
Stsc30494g00013 271 SMART B3_2 8 100 IPR003340 GO:0003677
Stsc30494g00013 271 SMART B3_2 176 269 IPR003340 GO:0003677
Stsc30494g00013 271 Gene3D - 155 270 IPR015300 -
Stsc30494g00013 271 ProSiteProfiles B3 DNA-binding domain profile. 7 100 IPR003340 GO:0003677
Stsc30494g00013 271 Pfam B3 DNA binding domain 176 267 IPR003340 GO:0003677
Stsc30494g00013 271 Pfam B3 DNA binding domain 8 98 IPR003340 GO:0003677
Stsc30494g00013 271 Coils Coil 147 167 - -
Stsc30494g00013 271 Gene3D - 2 101 IPR015300 -
Stsc30494g00013 271 SUPERFAMILY DNA-binding pseudobarrel domain 170 268 IPR015300 -
Stsc30494g00013 271 CDD B3_DNA 7 98 IPR003340 GO:0003677
Stsc30494g00013 271 MobiDBLite consensus disorder prediction 131 157 - -
Stsc30494g00013 271 SUPERFAMILY DNA-binding pseudobarrel domain 3 100 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30494g00013 Stsc-Chr30494 55474 57449 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30494g00013 127 269 B3 DNA Binding Superfamily AT3G18990 27.586 1.54e-12 65.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc30494g00013 B3 1.1e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30494g00013 - - adu:107471968 389.423