Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30494g00012 ATGCATGATTCTCAGATTCTGTTTAAAGATGGTTGGAAAGAGTTAGTTACATATTACTCTATAAAGCATGGGCATTTCTTGATGTTTGAATTGAATGGAAATTCCCAATTTGGGGTACAAATATGTGACATGAGTGGCCTTGAAATAGAGTATCCTTTCAATGTTAATCAGCAAGAAAAGGATGACATTGATGAGATCAGTGATGAAGCAGTTCAAGTGTTCGATGAAATGCCTCAAAGACAAAACAATAGAAGGAAGTCACCAATATCTCAGCTGGATCAAAGCAATGGTAATCAGTCTCAAGGAACAAGTTTTTTGAAGTCAACATCTGCATCGGTCGGAAAAGAACAAGATGATGTTGAAGAAGATGAAAGCGAGGATGGCATTTCCATTAAAGATAGAAAGGAAACTCAAATGAGTTCAAATGGTGCTCTGGAGGAAGCTGAGAAATTCACCTCACAAAATCCCTTTTTCATCATAACTGTTACAAAAAAATTTCTGGACCAAAGCAGACCGAATGTACCAATTGACTTTGTCAAAAGGTACCTCACAGAAAAGCACATTGCCAAGGTAAGGTTTAGGAAGAAATTGTGGCCTATGAAGTTGCTGCCTTATGTAACTAAAAAGAAGTCAATCCGTTTGTCAACCGGTTGGAACATCTTTGCTAAAGCAAGTAAATTGCAAGCTGGAGATGTTTGCATCTTTGAGCTGATCAACATGAAAGATGCAGAGTTTCATGTTCACTTCTTTAGGTCTCACCCCTAA 765 0.3778 MHDSQILFKDGWKELVTYYSIKHGHFLMFELNGNSQFGVQICDMSGLEIEYPFNVNQQEKDDIDEISDEAVQVFDEMPQRQNNRRKSPISQLDQSNGNQSQGTSFLKSTSASVGKEQDDVEEDESEDGISIKDRKETQMSSNGALEEAEKFTSQNPFFIITVTKKFLDQSRPNVPIDFVKRYLTEKHIAKVRFRKKLWPMKLLPYVTKKKSIRLSTGWNIFAKASKLQAGDVCIFELINMKDAEFHVHFFRSHP 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30494g00012 254 ProSiteProfiles B3 DNA-binding domain profile. 1 45 IPR003340 GO:0003677
Stsc30494g00012 254 CDD B3_DNA 156 251 IPR003340 GO:0003677
Stsc30494g00012 254 Gene3D - 1 46 IPR015300 -
Stsc30494g00012 254 SUPERFAMILY DNA-binding pseudobarrel domain 3 52 IPR015300 -
Stsc30494g00012 254 SUPERFAMILY DNA-binding pseudobarrel domain 151 252 IPR015300 -
Stsc30494g00012 254 Gene3D - 136 253 IPR015300 -
Stsc30494g00012 254 MobiDBLite consensus disorder prediction 83 113 - -
Stsc30494g00012 254 SMART B3_2 157 253 IPR003340 GO:0003677
Stsc30494g00012 254 ProSiteProfiles B3 DNA-binding domain profile. 157 253 IPR003340 GO:0003677
Stsc30494g00012 254 MobiDBLite consensus disorder prediction 75 146 - -
Stsc30494g00012 254 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 6 252 IPR044837 -
Stsc30494g00012 254 Pfam B3 DNA binding domain 157 252 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30494g00012 Stsc-Chr30494 50150 51864 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30494g00012 3 251 B3 DNA Binding Superfamily AT3G18990 26.298 6.35e-21 89.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc30494g00012 B3 5.5e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30494g00012 - - adu:107471968 392.889