Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30494g00010 ATGACTTCCAATGCAGTCCTTTTCTTCAAGATTATGCTCTCAAAATCTCTTCAACAAGGGATACTTAAGCTCCCAAAAAAATTCACTAGAAAATATGGTGATTCTCTATCAAACCCTGTGCTTCTCAAGCTTCCAGATCGAACTGAATGGAGAGTAGATTGGACTATGCATGATTCTCAGATTCTGTTTAAAGATGGTTGGAAAGAGTTAGTTACATATTACTCTATAAAGCATGGGCATTTCTTGATGTTTGAATTGAATGGAAATTCCCAATTTGGGGTACAAATATGTGACATGAGTGGCCTTGAAATAGAGTATCCTTTCAATGTTAATCAGCAAGAAAAGGATGACATTGATGAGATCAGTGATGAAGCAGTTCAAGTGTTCGATGAAATGCCTCAAAGACAAAACAATAGAAGGAAGTCACCAATATCTCAGCTGGATCAAAGCAATGGTAATCAGTCTCAAGGAACAAGTTTTTTGAAGTCAACATCTGCATCGGTCGGAAAAGAACAAGATGATGAAACAGTTGAAGAAGATGAAAGCGAGGATGGCATTTCCATTAAAGATAGAAAGGAAACTCAAATGAGTTCAAATGGTGCTCTGGAGGAAGCTGAGAAATTCACCTCACAAAATCCCTTTTTCATCATAACTGTTACAAAAAAATTTCTGGACCAAAGCAGACCGAATGTACCAATTGACTTTGTCAAAAGGTACCTCACAGAAAAGCACATTGCCAAGGTAAGGTTTAGGAAGAAATTGTGGCCTATGAAGTTGCTGCCTTATGTAACTAAAAAGAAGTCAATCCGTTTGTCAACCGGTTGGAACATCTTTGCTAAAGCAAGTAAATTGCAAGCTGGAGATGTTTGCATCTTTGAGCTGATCAACATGAAAGATGCAGAGTTTCATGTTCACTTCTTTAGGTCTCACCCCTAA 936 0.3782 MTSNAVLFFKIMLSKSLQQGILKLPKKFTRKYGDSLSNPVLLKLPDRTEWRVDWTMHDSQILFKDGWKELVTYYSIKHGHFLMFELNGNSQFGVQICDMSGLEIEYPFNVNQQEKDDIDEISDEAVQVFDEMPQRQNNRRKSPISQLDQSNGNQSQGTSFLKSTSASVGKEQDDETVEEDESEDGISIKDRKETQMSSNGALEEAEKFTSQNPFFIITVTKKFLDQSRPNVPIDFVKRYLTEKHIAKVRFRKKLWPMKLLPYVTKKKSIRLSTGWNIFAKASKLQAGDVCIFELINMKDAEFHVHFFRSHP 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30494g00010 311 MobiDBLite consensus disorder prediction 130 203 - -
Stsc30494g00010 311 SUPERFAMILY DNA-binding pseudobarrel domain 3 100 IPR015300 -
Stsc30494g00010 311 Pfam B3 DNA binding domain 8 98 IPR003340 GO:0003677
Stsc30494g00010 311 Pfam B3 DNA binding domain 214 309 IPR003340 GO:0003677
Stsc30494g00010 311 PANTHER B3 DOMAIN-CONTAINING 5 303 - -
Stsc30494g00010 311 MobiDBLite consensus disorder prediction 138 167 - -
Stsc30494g00010 311 SMART B3_2 8 100 IPR003340 GO:0003677
Stsc30494g00010 311 SMART B3_2 214 310 IPR003340 GO:0003677
Stsc30494g00010 311 ProSiteProfiles B3 DNA-binding domain profile. 214 310 IPR003340 GO:0003677
Stsc30494g00010 311 ProSiteProfiles B3 DNA-binding domain profile. 7 100 IPR003340 GO:0003677
Stsc30494g00010 311 Gene3D - 2 101 IPR015300 -
Stsc30494g00010 311 SUPERFAMILY DNA-binding pseudobarrel domain 208 309 IPR015300 -
Stsc30494g00010 311 CDD B3_DNA 213 308 IPR003340 GO:0003677
Stsc30494g00010 311 Gene3D - 193 310 IPR015300 -
Stsc30494g00010 311 CDD B3_DNA 7 98 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30494g00010 Stsc-Chr30494 50127 57449 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30494g00010 7 308 B3 DNA Binding Superfamily AT3G18990 27.059 5.43e-33 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc30494g00010 B3 8.3e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30494g00010 - - adu:107471968 470.7