Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30494g00008 ATGACTTCCATGTGCAATTTGAGAAATAAGAAGAATGTGCCAAATGCAATCCTTTTCTTCAAGATCATACTCTCTAAAACTCTTCAAGATGGCAATCTTAAGCTCCCAAAAAATTTCACTAAGAAATATGGTGGTGGTGTGCCAAATCCAGTGTATCTCAAGCCTTCAGATGGCACTGAATGGGAAGTTCATTGGACTAAGCATGATGGTAATATTTTGTTTGACAAGGGTTGGAAAGAGTTTGCTGCAAATTACTCTCTTGATCAAGGGCATTTGTTGATGTTTGAGTACAATGAATCTTCCCATATTGGGGTACAAATATGTGACATGAGTGGCCTTGAAATAGAGCTTCCTTTCCATGGAACTCAAGATGAAAAGGACAAGAATGTCGACATCAGCGATGATGCAGTTAAAGTGTTCGACGATATGCCTCAAAGCCACAATAGACTGAAATCACCAATGTCTTCTCCTCAACCATGTAAGAGACTCAGAACTTCTGGTACCACTGGAGAAATGCAAAACTTGCCTACTAAGTCTCAGGATGTGTCAGCATTTGCACCAGTCAAGAAAGAATTGGATGAGGATATAGGTGGTTTAATTCAATGTCCTGAAGTGGGAAAATCTTCAAAAGAAACCAAAGCTTTAAACAAAGCAACAACTTCTGAATCCAGGAAAAATCCCTCTTTCAAGGTCATCATGAAACAACACTATGTTAATAGTTATTCAATGCATGTCCCTTTATGGTTCCAAGAAAAATGCTTCAAGAAAAGGCAGGTGGCTGCAATGATCCTTCAAATCCTTGATGGGAGAACTTGGCCCGTTAGTTACAATGGTGGCAAGTTTAGTTCTGGATGGAAGAAATTTGCATTAGATAACAATTTAAAAGTGGGGGATGTTTGTGTTTTTGAGCTAACGAACCATGGAATCCTTTCGTTTAAGGTATCGATATCTAGAGCTGCACAAGAACCAAGTTTAGCTTTATCAAAAGATAAAGTCGAGGATGCTGAATACAAGGCAAACATTCCAAGGAAAGATAGAAAGGCAACTCAAAGAACTTCGATGGTGATTAGTCGCCAACGTGGAACAAATGGAAGAGCTTGGGAAGAAGCTATGAAATTCACCTCAGAAAATCCATTTTTCATGCTCCGAATAAGACCGAGGTTTCAGCGATCAGGCAGACCGGCAGTACCAACCCCTTTTGTGAGAAATTACCTCAAAGAAAAGGATATTGTGCAATTCCAAGTTGGAAACAAATTGTTTGATATAAAGTTGCTGAAATACAAAAGAAAGAATCCATCCCAGTTTTCCAGTGGCTGGATTTATTTTGCTGAAGAGAATAAATTGGAAGCTGAAGATGTTTGTATCTGTGAGCTAATCAACATAGAAGATGCAGTGTTTGATGTCCATATTTTTAGAGGCCATTGCTAG 1428 0.3887 MTSMCNLRNKKNVPNAILFFKIILSKTLQDGNLKLPKNFTKKYGGGVPNPVYLKPSDGTEWEVHWTKHDGNILFDKGWKEFAANYSLDQGHLLMFEYNESSHIGVQICDMSGLEIELPFHGTQDEKDKNVDISDDAVKVFDDMPQSHNRLKSPMSSPQPCKRLRTSGTTGEMQNLPTKSQDVSAFAPVKKELDEDIGGLIQCPEVGKSSKETKALNKATTSESRKNPSFKVIMKQHYVNSYSMHVPLWFQEKCFKKRQVAAMILQILDGRTWPVSYNGGKFSSGWKKFALDNNLKVGDVCVFELTNHGILSFKVSISRAAQEPSLALSKDKVEDAEYKANIPRKDRKATQRTSMVISRQRGTNGRAWEEAMKFTSENPFFMLRIRPRFQRSGRPAVPTPFVRNYLKEKDIVQFQVGNKLFDIKLLKYKRKNPSQFSSGWIYFAEENKLEAEDVCICELINIEDAVFDVHIFRGHC 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30494g00008 475 Gene3D - 360 474 IPR015300 -
Stsc30494g00008 475 Gene3D - 207 321 IPR015300 -
Stsc30494g00008 475 ProSiteProfiles B3 DNA-binding domain profile. 379 474 IPR003340 GO:0003677
Stsc30494g00008 475 CDD B3_DNA 227 318 IPR003340 GO:0003677
Stsc30494g00008 475 MobiDBLite consensus disorder prediction 146 175 - -
Stsc30494g00008 475 ProSiteProfiles B3 DNA-binding domain profile. 228 320 IPR003340 GO:0003677
Stsc30494g00008 475 SUPERFAMILY DNA-binding pseudobarrel domain 223 318 IPR015300 -
Stsc30494g00008 475 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 365 473 IPR044837 -
Stsc30494g00008 475 CDD B3_DNA 18 109 IPR003340 GO:0003677
Stsc30494g00008 475 Gene3D - 14 112 IPR015300 -
Stsc30494g00008 475 SUPERFAMILY DNA-binding pseudobarrel domain 373 473 IPR015300 -
Stsc30494g00008 475 SMART B3_2 229 320 IPR003340 GO:0003677
Stsc30494g00008 475 SMART B3_2 19 111 IPR003340 GO:0003677
Stsc30494g00008 475 SMART B3_2 379 474 IPR003340 GO:0003677
Stsc30494g00008 475 MobiDBLite consensus disorder prediction 148 175 - -
Stsc30494g00008 475 SUPERFAMILY DNA-binding pseudobarrel domain 17 111 IPR015300 -
Stsc30494g00008 475 CDD B3_DNA 378 472 IPR003340 GO:0003677
Stsc30494g00008 475 Pfam B3 DNA binding domain 20 109 IPR003340 GO:0003677
Stsc30494g00008 475 Pfam B3 DNA binding domain 230 318 IPR003340 GO:0003677
Stsc30494g00008 475 ProSiteProfiles B3 DNA-binding domain profile. 18 111 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30494g00008 Stsc-Chr30494 44484 47031 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30494g00008 348 472 B3 DNA Binding Superfamily AT3G18990 33.071 5.27e-10 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc30494g00008 B3 2.5e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30494g00008 - - adu:107471690 473.396