LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc30494g00007	ATGATGAGAGAGGAAGATGAAGCCACACCACCCATGGATAATTCCAATCCAGTCATTTTCTTCAAGATCATACTTTCATCTGCTCTTGAAGATGGAAAACTTAAGTTTCCAAACAGTTTCACTAAGAAATATGGAGATGGCTTATCAAACCCAGTGTTTCTCAAGCCTCCGGATGGAACTGAATGGAAAGTAAATTGGACTAAGGATGATGATGATGGGATTTTTCTTGAACATGGTTGGGATGAGTTTGCTATATATTACAATCTAGATCATGGGCATTTGATGTTTTTTGAGTATAAAAACACTTCTGAATTTGAGGTACTAATATGTGAAACCAGTGGCCTTGAAATAGATTATCCTTTCAATGTCATTCAACAAGAAAATGAACGGATAAAAAATATGGTAGATCAAGTGTTTGATGATATGCCTCAAAGCCAAAACAATAGAATGAAATCGCCAACGTCTTATCCTCAACTATACTTGCCACTTCTTGATCAAATTAATAGTAATGAGTGTCAAGGAACAAGCTTTGACAAGTCAACATTTGCATCTATTAAGAAAGAATTGGATGAGGATATAGGTGGTAGCACTCCATGTCCAAGAGTGGAGCAGTTAAGGGAAACCTTAAACAAAGCTACAACTTCCAAATCTAGACGAAACCCCTTTTTCATGGTTATCTTGAAACCATCCTATGCTAACAGTTATTCATTGAATATCCCTTCAAGATTCACAAGGAAATATCTGAGGAAGCAAGCGAAAACAGTCATCCTTCAGGTGCATGATCAGGGGAGAACATGGCCTGTTGCTTATAGTGTTGGCAAATTCAATTCTGGATGGAAGACATTTGCAAAAGACAATAATTTGAATGTAGGGGATCATTGTGTTTTTGAGCTCACCAATCCCAAAGGCCTTTATTTTAAGGTATCCATATCTCGAATTGGAGAAGAGACACTTCCGCTATCACAAGTTGAAGGAGACAGAGTCAATTGTTTAGACCCCCTCGACTATGCTGAAAGCGAGAGTGACATCGTGGTTAAAGCAGTCAAAAAGAAAACTAAAAGAACTTCAATGGCGATTCATCGGGACTTCCAGCCAGATGAAGAAACTCTGAAAGAAGCTAAGAAATTCACCTCTGAAAATCCATTTTTCATGGTCATTGTAAAGCCGAGTTTTCTGGGGGAACGCAGACCGTGCATCCCACTCTTCTTGGTAAAAAATTACCTCCAAAAAACTCATCTTGTGACATTTAAGTTTGGCGGGAGAGCGTGGCATCTCAAGTTTCTGCATTACGCAAAATACAAAACTGCAGTGAAGTTTTCCACTGGTTGGGGGCAATTTTGTAGAGAATGTGAATTGAAAGCAAGAGATATTTGTATCTTTGAGCTAATAAACAAAGAAGATGCAGTGTTTGATGTTCACTTGTTTAGGTGCCAAATTTAG	1440	0.3826	MMREEDEATPPMDNSNPVIFFKIILSSALEDGKLKFPNSFTKKYGDGLSNPVFLKPPDGTEWKVNWTKDDDDGIFLEHGWDEFAIYYNLDHGHLMFFEYKNTSEFEVLICETSGLEIDYPFNVIQQENERIKNMVDQVFDDMPQSQNNRMKSPTSYPQLYLPLLDQINSNECQGTSFDKSTFASIKKELDEDIGGSTPCPRVEQLRETLNKATTSKSRRNPFFMVILKPSYANSYSLNIPSRFTRKYLRKQAKTVILQVHDQGRTWPVAYSVGKFNSGWKTFAKDNNLNVGDHCVFELTNPKGLYFKVSISRIGEETLPLSQVEGDRVNCLDPLDYAESESDIVVKAVKKKTKRTSMAIHRDFQPDEETLKEAKKFTSENPFFMVIVKPSFLGERRPCIPLFLVKNYLQKTHLVTFKFGGRAWHLKFLHYAKYKTAVKFSTGWGQFCRECELKARDICIFELINKEDAVFDVHLFRCQI	479

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc30494g00007	479	CDD	B3_DNA	381	476	IPR003340	GO:0003677
	Stsc30494g00007	479	ProSiteProfiles	B3 DNA-binding domain profile.	222	314	IPR003340	GO:0003677
	Stsc30494g00007	479	PANTHER	B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED	367	476	IPR044837	-
	Stsc30494g00007	479	ProSiteProfiles	B3 DNA-binding domain profile.	19	113	IPR003340	GO:0003677
	Stsc30494g00007	479	SMART	B3_2	223	314	IPR003340	GO:0003677
	Stsc30494g00007	479	SMART	B3_2	20	113	IPR003340	GO:0003677
	Stsc30494g00007	479	SMART	B3_2	382	478	IPR003340	GO:0003677
	Stsc30494g00007	479	SUPERFAMILY	DNA-binding pseudobarrel domain	376	476	IPR015300	-
	Stsc30494g00007	479	Gene3D	-	12	114	IPR015300	-
	Stsc30494g00007	479	SUPERFAMILY	DNA-binding pseudobarrel domain	217	312	IPR015300	-
	Stsc30494g00007	479	ProSiteProfiles	B3 DNA-binding domain profile.	420	478	IPR003340	GO:0003677
	Stsc30494g00007	479	SUPERFAMILY	DNA-binding pseudobarrel domain	14	112	IPR015300	-
	Stsc30494g00007	479	Gene3D	-	202	315	IPR015300	-
	Stsc30494g00007	479	Gene3D	-	364	478	IPR015300	-
	Stsc30494g00007	479	CDD	B3_DNA	221	312	IPR003340	GO:0003677
	Stsc30494g00007	479	CDD	B3_DNA	19	110	IPR003340	GO:0003677
	Stsc30494g00007	479	Pfam	B3 DNA binding domain	223	309	IPR003340	GO:0003677
	Stsc30494g00007	479	Pfam	B3 DNA binding domain	21	111	IPR003340	GO:0003677
	Stsc30494g00007	479	Pfam	B3 DNA binding domain	382	476	IPR003340	GO:0003677

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc30494g00007	Stsc-Chr30494	40323	43278	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc30494g00007	353	477	B3 DNA Binding Superfamily	AT3G18990	33.077	2.92e-12	66.2

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	B3	Stsc30494g00007		B3	6.8e-11	CL0405