Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30494g00007 ATGATGAGAGAGGAAGATGAAGCCACACCACCCATGGATAATTCCAATCCAGTCATTTTCTTCAAGATCATACTTTCATCTGCTCTTGAAGATGGAAAACTTAAGTTTCCAAACAGTTTCACTAAGAAATATGGAGATGGCTTATCAAACCCAGTGTTTCTCAAGCCTCCGGATGGAACTGAATGGAAAGTAAATTGGACTAAGGATGATGATGATGGGATTTTTCTTGAACATGGTTGGGATGAGTTTGCTATATATTACAATCTAGATCATGGGCATTTGATGTTTTTTGAGTATAAAAACACTTCTGAATTTGAGGTACTAATATGTGAAACCAGTGGCCTTGAAATAGATTATCCTTTCAATGTCATTCAACAAGAAAATGAACGGATAAAAAATATGGTAGATCAAGTGTTTGATGATATGCCTCAAAGCCAAAACAATAGAATGAAATCGCCAACGTCTTATCCTCAACTATACTTGCCACTTCTTGATCAAATTAATAGTAATGAGTGTCAAGGAACAAGCTTTGACAAGTCAACATTTGCATCTATTAAGAAAGAATTGGATGAGGATATAGGTGGTAGCACTCCATGTCCAAGAGTGGAGCAGTTAAGGGAAACCTTAAACAAAGCTACAACTTCCAAATCTAGACGAAACCCCTTTTTCATGGTTATCTTGAAACCATCCTATGCTAACAGTTATTCATTGAATATCCCTTCAAGATTCACAAGGAAATATCTGAGGAAGCAAGCGAAAACAGTCATCCTTCAGGTGCATGATCAGGGGAGAACATGGCCTGTTGCTTATAGTGTTGGCAAATTCAATTCTGGATGGAAGACATTTGCAAAAGACAATAATTTGAATGTAGGGGATCATTGTGTTTTTGAGCTCACCAATCCCAAAGGCCTTTATTTTAAGGTATCCATATCTCGAATTGGAGAAGAGACACTTCCGCTATCACAAGTTGAAGGAGACAGAGTCAATTGTTTAGACCCCCTCGACTATGCTGAAAGCGAGAGTGACATCGTGGTTAAAGCAGTCAAAAAGAAAACTAAAAGAACTTCAATGGCGATTCATCGGGACTTCCAGCCAGATGAAGAAACTCTGAAAGAAGCTAAGAAATTCACCTCTGAAAATCCATTTTTCATGGTCATTGTAAAGCCGAGTTTTCTGGGGGAACGCAGACCGTGCATCCCACTCTTCTTGGTAAAAAATTACCTCCAAAAAACTCATCTTGTGACATTTAAGTTTGGCGGGAGAGCGTGGCATCTCAAGTTTCTGCATTACGCAAAATACAAAACTGCAGTGAAGTTTTCCACTGGTTGGGGGCAATTTTGTAGAGAATGTGAATTGAAAGCAAGAGATATTTGTATCTTTGAGCTAATAAACAAAGAAGATGCAGTGTTTGATGTTCACTTGTTTAGGTGCCAAATTTAG 1440 0.3826 MMREEDEATPPMDNSNPVIFFKIILSSALEDGKLKFPNSFTKKYGDGLSNPVFLKPPDGTEWKVNWTKDDDDGIFLEHGWDEFAIYYNLDHGHLMFFEYKNTSEFEVLICETSGLEIDYPFNVIQQENERIKNMVDQVFDDMPQSQNNRMKSPTSYPQLYLPLLDQINSNECQGTSFDKSTFASIKKELDEDIGGSTPCPRVEQLRETLNKATTSKSRRNPFFMVILKPSYANSYSLNIPSRFTRKYLRKQAKTVILQVHDQGRTWPVAYSVGKFNSGWKTFAKDNNLNVGDHCVFELTNPKGLYFKVSISRIGEETLPLSQVEGDRVNCLDPLDYAESESDIVVKAVKKKTKRTSMAIHRDFQPDEETLKEAKKFTSENPFFMVIVKPSFLGERRPCIPLFLVKNYLQKTHLVTFKFGGRAWHLKFLHYAKYKTAVKFSTGWGQFCRECELKARDICIFELINKEDAVFDVHLFRCQI 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30494g00007 479 CDD B3_DNA 381 476 IPR003340 GO:0003677
Stsc30494g00007 479 ProSiteProfiles B3 DNA-binding domain profile. 222 314 IPR003340 GO:0003677
Stsc30494g00007 479 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 367 476 IPR044837 -
Stsc30494g00007 479 ProSiteProfiles B3 DNA-binding domain profile. 19 113 IPR003340 GO:0003677
Stsc30494g00007 479 SMART B3_2 223 314 IPR003340 GO:0003677
Stsc30494g00007 479 SMART B3_2 20 113 IPR003340 GO:0003677
Stsc30494g00007 479 SMART B3_2 382 478 IPR003340 GO:0003677
Stsc30494g00007 479 SUPERFAMILY DNA-binding pseudobarrel domain 376 476 IPR015300 -
Stsc30494g00007 479 Gene3D - 12 114 IPR015300 -
Stsc30494g00007 479 SUPERFAMILY DNA-binding pseudobarrel domain 217 312 IPR015300 -
Stsc30494g00007 479 ProSiteProfiles B3 DNA-binding domain profile. 420 478 IPR003340 GO:0003677
Stsc30494g00007 479 SUPERFAMILY DNA-binding pseudobarrel domain 14 112 IPR015300 -
Stsc30494g00007 479 Gene3D - 202 315 IPR015300 -
Stsc30494g00007 479 Gene3D - 364 478 IPR015300 -
Stsc30494g00007 479 CDD B3_DNA 221 312 IPR003340 GO:0003677
Stsc30494g00007 479 CDD B3_DNA 19 110 IPR003340 GO:0003677
Stsc30494g00007 479 Pfam B3 DNA binding domain 223 309 IPR003340 GO:0003677
Stsc30494g00007 479 Pfam B3 DNA binding domain 21 111 IPR003340 GO:0003677
Stsc30494g00007 479 Pfam B3 DNA binding domain 382 476 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30494g00007 Stsc-Chr30494 40323 43278 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30494g00007 353 477 B3 DNA Binding Superfamily AT3G18990 33.077 2.92e-12 66.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc30494g00007 B3 6.8e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30494g00007 - - adu:107471690 739.569