Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30494g00004 ATGGTTTTCCATGAAAGAAGTTTCTTTAAAGTACTTGTACATGACTTTCAGCATGAGTTGAAAATTCCTGAACGTTTTGTGAGAGAATATTGGAAAGGATTATCAAATCCTATAGTGCTAAAGCTACCAAACAATGGTGAACAAAGAGTAATACATTGGATTCAAAGCAATGAAGATCAAATCTGGCTGAAACAAGGTTGGGCACAAGTTGTGGAGGATTTTGGCTTAGAGTATGCTCAGATTTTGACATTTGACTATAAAGGAAGGTCTTGCTTTGAAGTCAAAATATATCACAAGAAGGATTCTGTAACATTGCCCCCTCATAATCAAAGATGTTTCTTTCAGATTCTTGTTCACAGCAAGTTTCACCAAAAGCTGATGGTTCCTAAGTGTTTTTCAAATGAATATTGGAAAAGAATGTCAAACCCTATAAAGTTGGAGTTACCAGATGGGATTGAGAAGAACGTGAATTGGATCAAAAGAGGAGAAACTATTTGGTTGGAACAAGGTTGGGAAAAGGTTGTGGATTTGTGTGGTTTGTGTTATGAGTGGTTGTTGACTTTTGACTACAAAGGAAAGTCTTGTTTTGAAGTCAAAGTATATGATAACACTGCTTTGAGGGTTGCTTATTATAATATTCATGAGAAGAAGAAGAATAATAACAACAAAGATAGTGAAGAAACTGTGACTGATGATGATGATGATGAAGATGATGATGATGATGATGATGATGATTTTGTTGATGATGATGATTTTGTTGTTGATGATGATTATTGTGAAGTTGAGAGTGTGAGGAGTAGTGATGATGATGATGAATCTGATGAGTATGATGAACAATATTTCAGAAGAAACAAGACTAAAACAGTTAATGGGTTGCATAGGAATCCCAGATTCAAGATTCGGATGAGAGAATCATATGTTACAGGAAGATGTGTGGCAATACCATCAAAATTTGCAAGGAGGCATTTGAAAGAAGGACCAATTAGAATGCATATGGGTAATAGAAGGTGGATTGTGAACTACAAAACATGGAAAGGAGGAAGTGGTGATAAAAAATACCGGAAGCACAAATTGCAAAGTGGATGGCACAAGTTTAGAAGAGAGAATCATTTGGAGGTTGGTGATGTTTGTGTCTTTGAGCTAACTAGCAAACTTCCCCAAACTATGATTGTCAGATTGAAGAGTGGATGA 1191 0.3577 MVFHERSFFKVLVHDFQHELKIPERFVREYWKGLSNPIVLKLPNNGEQRVIHWIQSNEDQIWLKQGWAQVVEDFGLEYAQILTFDYKGRSCFEVKIYHKKDSVTLPPHNQRCFFQILVHSKFHQKLMVPKCFSNEYWKRMSNPIKLELPDGIEKNVNWIKRGETIWLEQGWEKVVDLCGLCYEWLLTFDYKGKSCFEVKVYDNTALRVAYYNIHEKKKNNNNKDSEETVTDDDDDEDDDDDDDDDFVDDDDFVVDDDYCEVESVRSSDDDDESDEYDEQYFRRNKTKTVNGLHRNPRFKIRMRESYVTGRCVAIPSKFARRHLKEGPIRMHMGNRRWIVNYKTWKGGSGDKKYRKHKLQSGWHKFRRENHLEVGDVCVFELTSKLPQTMIVRLKSG 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30494g00004 396 CDD B3_DNA 296 381 IPR003340 GO:0003677
Stsc30494g00004 396 Gene3D - 105 205 IPR015300 -
Stsc30494g00004 396 Gene3D - 3 101 IPR015300 -
Stsc30494g00004 396 MobiDBLite consensus disorder prediction 227 251 - -
Stsc30494g00004 396 ProSiteProfiles B3 DNA-binding domain profile. 297 396 IPR003340 GO:0003677
Stsc30494g00004 396 MobiDBLite consensus disorder prediction 219 251 - -
Stsc30494g00004 396 Gene3D - 278 394 IPR015300 -
Stsc30494g00004 396 Pfam B3 DNA binding domain 8 97 IPR003340 GO:0003677
Stsc30494g00004 396 Pfam B3 DNA binding domain 299 392 IPR003340 GO:0003677
Stsc30494g00004 396 CDD B3_DNA 6 97 IPR003340 GO:0003677
Stsc30494g00004 396 SUPERFAMILY DNA-binding pseudobarrel domain 294 394 IPR015300 -
Stsc30494g00004 396 ProSiteProfiles B3 DNA-binding domain profile. 5 100 IPR003340 GO:0003677
Stsc30494g00004 396 SUPERFAMILY DNA-binding pseudobarrel domain 108 203 IPR015300 -
Stsc30494g00004 396 SMART B3_2 298 395 IPR003340 GO:0003677
Stsc30494g00004 396 SMART B3_2 8 100 IPR003340 GO:0003677
Stsc30494g00004 396 SMART B3_2 113 204 IPR003340 GO:0003677
Stsc30494g00004 396 SUPERFAMILY DNA-binding pseudobarrel domain 6 99 IPR015300 -
Stsc30494g00004 396 PANTHER B3 DOMAIN-CONTAINING 5 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30494g00004 Stsc-Chr30494 29467 32359 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30494g00004 111 381 B3 DNA Binding Superfamily AT3G18990 24.390 1.16e-19 87.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc30494g00004 B3 3.2e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30494g00004 - - adu:107471689 488.804