Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30494g00003 ATGGCTCCTCGTCATCAACAAGGTGATCCTACTACTACTTTTGTCAGGTTCTTCAAGATCATTTGTCATTGGCATATTCGGGATGAGAAGATTAAGCTTCCAACGGAATTCACAAAAAAATGTGGATTGAAACTCCCAAATCCGGTGATTCTGAGAGTTACAGATGGCAGAAAAAAGAAAGTGCATTGGACCAAAATCAATGGCTCAATTTGGTTTATTGGGAAGGAATGGAAAGAGTTTCTTGAGCACTACTCTGTCTCCCATGGCCACCTTATGTTGTTCAAATATTCTCTTGTAGCTTCATTTTTTGAGGTCCAAATATTTGACAACACCACTCTTGAAATTGATTACCCTCATCACACTCATGAACCCCATTATGATGATGATCATGTTGATGATGATGATGATGGTGATGACTCTGATTATGATATTAATGATGATGATGATAATGATAATGATATTGATGATGATGAAGATTATGACGATGATAATGTGAAGGTTCATAAATATGATGAATATCAATGGAAAGACACAAGTGAAAGTTCTGCTGGGAGAAAAAGTAACAACCCCAGTTTTGAGGTTGTGATGCAAGATTCGTATATCAATGGAGGAAGATGCATGGCTATTCCATCTAATTTTGCAAGGGAGTTTATGAAGGAAGGAGATTATCTTCTAAAAGTGGTGGAAAATGGGAGAATATGGAAAGTGATGTTCAAAACTTGGTGTGGATATGGAATGCCTTACAAGAAGTACAAATTGCAAAAGGGTTGGGCCAAGTTTAGCCAAGGGAACAAGTTAGAGAAGAATGATGTATGTGTTTTCGAGCTTGTTCCCAACACCGCCATACCAACCTTGAGTGTTCTAATTCAGCGTAACCATGGTGGTAGAAGCTGA 894 0.3814 MAPRHQQGDPTTTFVRFFKIICHWHIRDEKIKLPTEFTKKCGLKLPNPVILRVTDGRKKKVHWTKINGSIWFIGKEWKEFLEHYSVSHGHLMLFKYSLVASFFEVQIFDNTTLEIDYPHHTHEPHYDDDHVDDDDDGDDSDYDINDDDDNDNDIDDDEDYDDDNVKVHKYDEYQWKDTSESSAGRKSNNPSFEVVMQDSYINGGRCMAIPSNFAREFMKEGDYLLKVVENGRIWKVMFKTWCGYGMPYKKYKLQKGWAKFSQGNKLEKNDVCVFELVPNTAIPTLSVLIQRNHGGRS 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30494g00003 297 PANTHER B3 DOMAIN-CONTAINING 16 279 - -
Stsc30494g00003 297 MobiDBLite consensus disorder prediction 119 162 - -
Stsc30494g00003 297 SUPERFAMILY DNA-binding pseudobarrel domain 13 110 IPR015300 -
Stsc30494g00003 297 CDD B3_DNA 190 288 IPR003340 GO:0003677
Stsc30494g00003 297 Gene3D - 11 112 IPR015300 -
Stsc30494g00003 297 SUPERFAMILY DNA-binding pseudobarrel domain 187 284 IPR015300 -
Stsc30494g00003 297 SMART B3_2 17 111 IPR003340 GO:0003677
Stsc30494g00003 297 SMART B3_2 192 291 IPR003340 GO:0003677
Stsc30494g00003 297 Gene3D - 172 293 IPR015300 -
Stsc30494g00003 297 Pfam B3 DNA binding domain 192 288 IPR003340 GO:0003677
Stsc30494g00003 297 ProSiteProfiles B3 DNA-binding domain profile. 192 293 IPR003340 GO:0003677
Stsc30494g00003 297 CDD B3_DNA 16 109 IPR003340 GO:0003677
Stsc30494g00003 297 MobiDBLite consensus disorder prediction 129 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30494g00003 Stsc-Chr30494 26435 27999 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30494g00003 4 136 B3 DNA Binding Superfamily AT4G01580 33.835 5.48e-18 78.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc30494g00003 B3 2.4e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30494g00003 - - ahf:112784208 376.711