Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30494g00002 ATGTCTTCTCAAGAACGTGATGTGGTTCACTTCTTCAAGGTTGTTCTTGAAAAACACCTTCTCGATGGTGGAGTTCTGAAATTACCAAAGATTTTTGTGAGTAAATACTGGAAAGGGATTACGTCACGTTGTGTTGTTCTAACTCTTCCAAACAGAACTAACTTTGAAGTTCATTTATCAAGAGACGAACATGGTGACGTTTTTTTTAGCAACGGTTGGAAGGAATTTGCACAACACTTGTCTCTCGAAGCGCGACAGTTTCTAGTGTTTCGTTATGAAGTGAAAAAATCTAATAATAATAATAATAATAGTAATAAAAACAAGTTTGATGTTGTGGTTTTGAGTTCAAGTGGTTTAGAAATCAAGTACCCTCCTGCTTGTTCTAAGAGAAAGGATGATCATGTTATTAATGGTATTGGAAAAGGGCAAAAGGGTCAAAGGAGTAATGGTTGTTCTGTTGAGATTGGTAATGGGAAAAGACGAAGATGCCCCTCACCACCATCACCACCACAGCCACTAGTATTATCTGATGATGATGATGAGACTATGAATTTCAAAAAGATGAAGAGTAGTGTAAAAGAAGAGCCTGCAAAGATGAAAGCCTCTAATAATGATGAGTCAGAAATATTGGACCCTAAAATCATCAAGAACTTTCATGAGAAAGTGAAGAAGAAATTCCGATCTGAGAACCCCTATTTTGTATGTACAATTGGGAAAACCTACTCTGACAGAGACCTCTTGGTGATACCAAACGATTTTGCTAAACCAATTCTTAGGTATAGAGAAGGAAATGCAAAGCTGTTTGTTTTTCGTTCAGATAAATATTTGCAAGTGAAGATTAGACTCGCAAACAGACAACTTACAATTACAAGTGGTTGGAAGAAATTCTCAATCGGTCATGGTGTGAAGATGGGTGATGTTTGTGTCTTTGAGTTGGTTGATCCATTTGATGTTTCTTTTAGAGTTCATGTTCATCGTTTTGGAGAAGATGATGATGATGATTTGACTCCTCTCTCTCCTGAATATTCATCAGAGCAAGAAGGACCTAGTTATAGGGCTCCTTCTTCATCAGATGTTAAAAAGCATAAAATAGAGAAAGCTAATTCCGGATTCATGCCCAAGAATGAGTTCACCATTCACATCAGCCGTGCTACTTTTGCATATCATTATGCGGTGATACCAATTGAGTACATAACGAGTTACCGTGTAAAGAGTGGAACATTTGCAACATTGCAAGTTGATGGGAAGGGAGAATGGAAGGTGAAAGTACTTTATTATCCTCGAAATGGGTATGCTAGATTTTCTCAAGGTTGGCCTGATTTTGTTAGGGAATTCAGATTGAAGATTGGTGATTCTTGTCTCTGCGAGCTAATTCATGTGGACAATCTTAAGTTCCGAGTTTCACTTATAAGAAGAAACACACACTCAACTAGCTAG 1437 0.3751 MSSQERDVVHFFKVVLEKHLLDGGVLKLPKIFVSKYWKGITSRCVVLTLPNRTNFEVHLSRDEHGDVFFSNGWKEFAQHLSLEARQFLVFRYEVKKSNNNNNNSNKNKFDVVVLSSSGLEIKYPPACSKRKDDHVINGIGKGQKGQRSNGCSVEIGNGKRRRCPSPPSPPQPLVLSDDDDETMNFKKMKSSVKEEPAKMKASNNDESEILDPKIIKNFHEKVKKKFRSENPYFVCTIGKTYSDRDLLVIPNDFAKPILRYREGNAKLFVFRSDKYLQVKIRLANRQLTITSGWKKFSIGHGVKMGDVCVFELVDPFDVSFRVHVHRFGEDDDDDLTPLSPEYSSEQEGPSYRAPSSSDVKKHKIEKANSGFMPKNEFTIHISRATFAYHYAVIPIEYITSYRVKSGTFATLQVDGKGEWKVKVLYYPRNGYARFSQGWPDFVREFRLKIGDSCLCELIHVDNLKFRVSLIRRNTHSTS 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30494g00002 478 MobiDBLite consensus disorder prediction 339 353 - -
Stsc30494g00002 478 PANTHER B3 DOMAIN-CONTAINING 3 198 - -
Stsc30494g00002 478 ProSiteProfiles B3 DNA-binding domain profile. 232 328 IPR003340 GO:0003677
Stsc30494g00002 478 Gene3D - 2 118 IPR015300 -
Stsc30494g00002 478 SMART B3_2 11 101 IPR003340 GO:0003677
Stsc30494g00002 478 SMART B3_2 233 328 IPR003340 GO:0003677
Stsc30494g00002 478 SMART B3_2 377 473 IPR003340 GO:0003677
Stsc30494g00002 478 CDD B3_DNA 247 326 IPR003340 GO:0003677
Stsc30494g00002 478 CDD B3_DNA 392 471 IPR003340 GO:0003677
Stsc30494g00002 478 ProSiteProfiles B3 DNA-binding domain profile. 376 473 IPR003340 GO:0003677
Stsc30494g00002 478 Gene3D - 357 474 IPR015300 -
Stsc30494g00002 478 Gene3D - 216 328 IPR015300 -
Stsc30494g00002 478 Pfam B3 DNA binding domain 240 325 IPR003340 GO:0003677
Stsc30494g00002 478 Pfam B3 DNA binding domain 382 473 IPR003340 GO:0003677
Stsc30494g00002 478 Pfam B3 DNA binding domain 11 95 IPR003340 GO:0003677
Stsc30494g00002 478 ProSiteProfiles B3 DNA-binding domain profile. 11 117 IPR003340 GO:0003677
Stsc30494g00002 478 SUPERFAMILY DNA-binding pseudobarrel domain 5 93 IPR015300 -
Stsc30494g00002 478 SUPERFAMILY DNA-binding pseudobarrel domain 375 473 IPR015300 -
Stsc30494g00002 478 MobiDBLite consensus disorder prediction 139 180 - -
Stsc30494g00002 478 CDD B3_DNA 10 93 IPR003340 GO:0003677
Stsc30494g00002 478 MobiDBLite consensus disorder prediction 331 360 - -
Stsc30494g00002 478 SUPERFAMILY DNA-binding pseudobarrel domain 227 326 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30494g00002 Stsc-Chr30494 17279 21138 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30494g00002 332 473 B3 DNA Binding Superfamily AT3G18990 29.655 1.22e-08 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc30494g00002 B3 2.9e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30494g00002 - - ahf:112717071 395.201