Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30494g00001 ATGTCTACGCATTCACCAAGCTTCTTTAAGATTCTCATACACAAAAACAAGTTCAAAGAAGTGCTGATGATTCCGAAGGGTTTTGTGAGAAGATACTGGAACAGGATATCATCAAATCCTATAGTGCTGAAGCTACCAAACAATGTTGAAGAAAAAGTGCATTGGATTCAAGAGAAGGAAAAAGATGAAGTTTGGTTGGAGAAGGGTTGGGAAAGAGTTGTAAAATTATGTAACTTGCAATATGGATTTTTAGTAACTTTTGATTTGAAAGAAAAATCAACCTTTGAAATCAAAGTATATGACCAGAGTGCTTTACAACTCCACTACCATTCACATTTTGGAGTTCATAATGATGATGATCAAAGGGAACCAAACACAAAGACAACCGACATCACACAAGTGGCCCAAATCCTCTATGGATCCACACAAAGGGCCCACCACATCAATTATCGGATCCACATGAGATCAGGATTATATCTGTACCGATTTTGTACGGATTTATCTCCTAAACTAGAGGAACCATCACGGGTATATAAAGAGGAGATCAGCTCTCCTCCAGGTAGCAGTAAAAGCATGGCTAAAGTTAGGAGAAATAACATGAAATATGATGGTGGAAGGAATGCACTAGAGAGAGCTGAAGCCATGTGTTCAAATCTGAAAAATCCATCTTTTGTTCTTGATATGAAGCCTTCCTATATTTACGGAAACGTTGTGTTTATACCGAGTTTGTTTTCGAGAAAATACTTAGATGGATTAAATGGAAGTGGCACAATTTGGGTTAGTGAAGATGAAGAGAAGAAATGGGACATTCATTGCAGTTTCTATAATGAGGGAAAACGAAGAAAAACTGCCATCACTGGTGGTTGGAGGAAATTTCGTGTGGATAATGAGTTACAAGTTGGAACTAGAAAAAGGGACATGAGCGAAGTTAGGAGAAATAATAATATTCAAAATGCTCAAAGAAAAAAGGCACTAGAGAAGGCCAAAGCCATCTCTTCAAAGCTGGAGAATCCTTTTTTTTTTCGTGATATGCACCCTTCATATATAAAGAACAACCTGGTAATTCCAAATTTGTTTTCGAGAGAACACTTAAATGAGTTAAATGGAAGTGGCACAATTTGGGTTAGTGATGAAGATGAAGAAAAGAAATGGCCAATAAAATACAATTTCGATGATTCTCGGAGACGAAGTTATATCAATGGTGGTTGGAACGTATTTTGCAAGAAATATGAATTAAAAGTCGAGTCTGAAGAAAGTCCGAATAGGCAGATCAATAATCAATTCGAGATTCGTGTAACAAAACAAAGATTGCGTTCATCAACTTTCGTAGTACGAGCTACTAGCTAG 1347 0.3697 MSTHSPSFFKILIHKNKFKEVLMIPKGFVRRYWNRISSNPIVLKLPNNVEEKVHWIQEKEKDEVWLEKGWERVVKLCNLQYGFLVTFDLKEKSTFEIKVYDQSALQLHYHSHFGVHNDDDQREPNTKTTDITQVAQILYGSTQRAHHINYRIHMRSGLYLYRFCTDLSPKLEEPSRVYKEEISSPPGSSKSMAKVRRNNMKYDGGRNALERAEAMCSNLKNPSFVLDMKPSYIYGNVVFIPSLFSRKYLDGLNGSGTIWVSEDEEKKWDIHCSFYNEGKRRKTAITGGWRKFRVDNELQVGTRKRDMSEVRRNNNIQNAQRKKALEKAKAISSKLENPFFFRDMHPSYIKNNLVIPNLFSREHLNELNGSGTIWVSDEDEEKKWPIKYNFDDSRRRSYINGGWNVFCKKYELKVESEESPNRQINNQFEIRVTKQRLRSSTFVVRATS 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30494g00001 448 CDD B3_DNA 338 414 IPR003340 GO:0003677
Stsc30494g00001 448 ProSiteProfiles B3 DNA-binding domain profile. 338 436 IPR003340 GO:0003677
Stsc30494g00001 448 SMART B3_2 8 103 IPR003340 GO:0003677
Stsc30494g00001 448 SMART B3_2 340 436 IPR003340 GO:0003677
Stsc30494g00001 448 SMART B3_2 224 314 IPR003340 GO:0003677
Stsc30494g00001 448 Gene3D - 203 303 IPR015300 -
Stsc30494g00001 448 Gene3D - 315 417 IPR015300 -
Stsc30494g00001 448 SUPERFAMILY DNA-binding pseudobarrel domain 336 414 IPR015300 -
Stsc30494g00001 448 Gene3D - 1 104 IPR015300 -
Stsc30494g00001 448 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 15 301 IPR044837 -
Stsc30494g00001 448 SUPERFAMILY DNA-binding pseudobarrel domain 2 102 IPR015300 -
Stsc30494g00001 448 ProSiteProfiles B3 DNA-binding domain profile. 223 324 IPR003340 GO:0003677
Stsc30494g00001 448 Pfam B3 DNA binding domain 228 301 IPR003340 GO:0003677
Stsc30494g00001 448 Pfam B3 DNA binding domain 342 414 IPR003340 GO:0003677
Stsc30494g00001 448 Pfam B3 DNA binding domain 8 100 IPR003340 GO:0003677
Stsc30494g00001 448 SUPERFAMILY DNA-binding pseudobarrel domain 218 301 IPR015300 -
Stsc30494g00001 448 CDD B3_DNA 6 101 IPR003340 GO:0003677
Stsc30494g00001 448 ProSiteProfiles B3 DNA-binding domain profile. 7 103 IPR003340 GO:0003677
Stsc30494g00001 448 CDD B3_DNA 222 301 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30494g00001 Stsc-Chr30494 12417 15959 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30494g00001 6 301 B3 DNA Binding Superfamily AT3G18990 23.148 4.04e-15 74.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc30494g00001 B3 2.7e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30494g00001 - - aip:110267705 226.483