Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30493g00004 ATGGCACAAATTGTATCTGTTCTAATGCAATTGCCATATGAGTTTAACTCATCCCTTTACCTTTCAATAGTAGTTGGCATCATTAGCATCTTTCTTGTGCTTAATCTCACAAGAAGAAGAAGCAAATCCATTAACCTTCCACCATCACCACCAAAACTACCTTTCATTGGAAACCTTCACCAATTAGGAACATTGCCACACCGTTCTTTCAAAGAACTCTCTGACAAGCATGGCCCTCTCATGTTCCTTCAATTAGGGCAAATCCCAACATTAGTGGTTTCGTCGGCCGATGTGGCCAAAGAAATCATAAAAAGCCACGATATTGTTTTCTCAAGCCGACCTCAGACTACGGCTGCAAATATCTTTCTTTATGGTTGTAAAGACATAGGATTTGCACCATATGGTGAAGAGTGGAGACAGAAAAGAAAAGTTTGTGTTCTTGAACTTTTAAGCTTTAAAAGAGTGAAATCATTTCTTCCTATAAGACAACAAGAGGTTGCAGAACTTGTTGCTACCATTCGAAAAACATATTCAAGAGAAGAATCATCATCATCTAATTGTGTGATTAATCTTAGTGAGTTGATGATTGCTACATCAAACAACATAATTTCAAGATGTGCTCTTGGGCAAAAGTATGATATTCCAGATGGTAGTGGCCATGAAAGCTTTGGAGAGCTTGGAAGGAAGTTGCTAGGGCAACTCACTGAATTTTGTGTTGGTGATTTCTTCCCTTCATTGGGTTGGATTGATGTTGTTAGAGGCTTGATTTCCGAGTTTAATGCCACTTTTGTTGCATTAGATTCTTTCTTGAATGGGGTAATTGAAGAGCACAAGAAAAAGAAGAACAACAATGATGATGATGATAATAGTAACAAAGACTTTGTGGATATACTTCTTCATCTTCAAGAGAAGGGTATGCTTGAATTTGAGCTCACTCAAGCCGATCTCAAAGCATTACTAACGGACATGTTTATTGGAGGGAGTGATACTACCTCAACAGCCTTAGAATGGACTTTTGCTGAACTCCTTATGAAGCCAAGCACCATGAAGAAAGTTCAAGAAGAGATAAGGAGAATTGTGCGGAACAAATCAATGATAGATGAAAATGATATAAATCAAATGAATTACTTGAAGTGTGTGATAAAAGAAGTTCTCAGGCTACACCCACCTCTTCCTGTCTTACTTCCTAGACAAACAACATCAAATTCAAAAATAAAAGGGTACAATATTCCTTCAAAAACAACTGTTTATTTAAATGTTTGGGCAATTCATAGAGATCCTGAATTATGGGATAATCCTGAAGAATTCATCCCTGAAAGATTTGAAAGTATTCAAATTGATTATAAGGGACAAGATTTTCCGTTGTTGCCATTTGGTACTGGGAGAAGGGGGTGTCCTGGAATTTCATTTGGACTTGGTTCTACTGAAATTATTCTTGCTAATCTTTTATATTGGTTTGATTGGAAACTGCCTTCTGAACATAGTGATGAAGTAGTGCAAGACGTTATTGATATGAGTGAAATGTCTGGAATCACTGTTAGCAAGAAAGTTCCACTTGTTCTTCAACCTATACCATATTATCATTAA 1587 0.3693 MAQIVSVLMQLPYEFNSSLYLSIVVGIISIFLVLNLTRRRSKSINLPPSPPKLPFIGNLHQLGTLPHRSFKELSDKHGPLMFLQLGQIPTLVVSSADVAKEIIKSHDIVFSSRPQTTAANIFLYGCKDIGFAPYGEEWRQKRKVCVLELLSFKRVKSFLPIRQQEVAELVATIRKTYSREESSSSNCVINLSELMIATSNNIISRCALGQKYDIPDGSGHESFGELGRKLLGQLTEFCVGDFFPSLGWIDVVRGLISEFNATFVALDSFLNGVIEEHKKKKNNNDDDDNSNKDFVDILLHLQEKGMLEFELTQADLKALLTDMFIGGSDTTSTALEWTFAELLMKPSTMKKVQEEIRRIVRNKSMIDENDINQMNYLKCVIKEVLRLHPPLPVLLPRQTTSNSKIKGYNIPSKTTVYLNVWAIHRDPELWDNPEEFIPERFESIQIDYKGQDFPLLPFGTGRRGCPGISFGLGSTEIILANLLYWFDWKLPSEHSDEVVQDVIDMSEMSGITVSKKVPLVLQPIPYYH 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30493g00004 528 PANTHER CYTOCHROME P450 71B11-RELATED 34 524 - -
Stsc30493g00004 528 CDD CYP71-like 76 519 - -
Stsc30493g00004 528 Gene3D Cytochrome P450 32 521 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30493g00004 528 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 458 467 IPR017972 GO:0005506|GO:0016705
Stsc30493g00004 528 PRINTS P450 superfamily signature 326 343 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30493g00004 528 PRINTS P450 superfamily signature 379 390 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30493g00004 528 PRINTS P450 superfamily signature 456 465 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30493g00004 528 FunFam Cytochrome P450 83B1 34 522 - -
Stsc30493g00004 528 SUPERFAMILY Cytochrome P450 47 525 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30493g00004 528 PRINTS E-class P450 group I signature 74 93 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30493g00004 528 PRINTS E-class P450 group I signature 315 332 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30493g00004 528 PRINTS E-class P450 group I signature 98 119 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30493g00004 528 PRINTS E-class P450 group I signature 455 465 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30493g00004 528 PRINTS E-class P450 group I signature 465 488 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30493g00004 528 PRINTS E-class P450 group I signature 378 396 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30493g00004 528 PRINTS E-class P450 group I signature 198 216 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30493g00004 528 PRINTS E-class P450 group I signature 419 443 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30493g00004 528 PRINTS E-class P450 group I signature 335 361 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30493g00004 528 Pfam Cytochrome P450 47 497 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30493g00004 Stsc-Chr30493 27241 30737 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30493g00004 38 519 Cytochrome P450 AT3G48310 43.271 8.32e-150 436
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30493g00004 K20617 - gmx:100792382 631.328