Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30492g00002 ATGGAGCCCTGTGAGGAAATTTATGCAGAATGGAGTTCCCTTAGTGGATCATACACAGCTGAGGAAGCTGATTTCATGAACCAGTTTCTTAGCAACTGCTCACACACACAACATCTGCATGCAAATTTGAATGCAGGAATTCCTTCTGCATTATGGCATGGTCATGCAGACATTGATAGCAGTTCATTTTATGCTGCAAATGCTTCTGATAATAGTAATCTTTTTAGTTTTTTACAAGAGCAGTTTAGTTCCACTGATTATAGCAGTAGTAATATGTTTCCAATTGTAAGTAGTGACAACTTGAGTGATCCATTAACCAACACGGTGGATCCCTCATTAAGCACATATACTGATAAAGAGTTAGGTGTAGATGTTATTGCTGATAAGAATGTAGTAAGCGAACCAGTTTCTGAACCAGCCCAAGAGTGTATAAGCAGCAAGTTGGAGAAGCCAATAAAAAGGTCTCGGAGTTCAACTGAGGTACTAAAGAACAAGAAAAATGTTAAAACTACAAAGAAACCAAAATCTGCTTCCAGTAACAACATAAAAGAAGATAGATGTCTGGGCCAGGAGGAAAACTTGAGCAGTTCCTGCTCAGAAGATGAATTGAATACTAATACATGTCATAAGCTAAATGGAGGAGAATCTTCAAGCTTGAGCCAGAAATATTCTACAGCTCTTCAGTTAAATGGCAAATCTAGAACTAGTAGAGGTTCTGCTACTGATCCACAGAGCATCTATGCAAGGAAAAGAAGAGCAAGAATAAATGAAAGGTTGAGAATCTTACAAAACTTAGTGCCTAATGGAACCAAGGTGGATATCAGCACAATGCTTGAAGAAGCAGTCCAATATGTAAAATTTTTACAGCTCCAAATTAAGCTTTTGAGCTCTGATGATCTCTGGATGTACGCTCCAATTGCTTACAATGGAATGAACATTGGACTAGACTTCAATATTACCACAGCCAAACAAAATAATAATACTAGATATATAGCATAG 999 0.3754 MEPCEEIYAEWSSLSGSYTAEEADFMNQFLSNCSHTQHLHANLNAGIPSALWHGHADIDSSSFYAANASDNSNLFSFLQEQFSSTDYSSSNMFPIVSSDNLSDPLTNTVDPSLSTYTDKELGVDVIADKNVVSEPVSEPAQECISSKLEKPIKRSRSSTEVLKNKKNVKTTKKPKSASSNNIKEDRCLGQEENLSSSCSEDELNTNTCHKLNGGESSSLSQKYSTALQLNGKSRTSRGSATDPQSIYARKRRARINERLRILQNLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYAPIAYNGMNIGLDFNITTAKQNNNTRYIA 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30492g00002 332 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 238 305 IPR036638 GO:0046983
Stsc30492g00002 332 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 239 288 IPR011598 GO:0046983
Stsc30492g00002 332 FunFam Basic helix-loop-helix transcription factor 240 297 - -
Stsc30492g00002 332 Pfam Helix-loop-helix DNA-binding domain 249 289 IPR011598 GO:0046983
Stsc30492g00002 332 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 27 312 - -
Stsc30492g00002 332 SMART finulus 245 294 IPR011598 GO:0046983
Stsc30492g00002 332 MobiDBLite consensus disorder prediction 137 188 - -
Stsc30492g00002 332 Gene3D - 237 296 IPR036638 GO:0046983
Stsc30492g00002 332 MobiDBLite consensus disorder prediction 147 167 - -
Stsc30492g00002 332 CDD bHLH_AtIND_like 240 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30492g00002 Stsc-Chr30492 6902 8328 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30492g00002 6 315 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 40.223 3.47e-60 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc30492g00002 HLH 1.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30492g00002 - - ahf:112711907 439.113