Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30492g00001 ATGGAACCAGCTCAATTGATTTCTGAAGAATGGGGTTCTCTTAGTGGACTATACACAGCTGAGGAAGCTGAATTCATGACTCAGCTTCTTGCTGGTAATAACTATTCTGTCTCAGACAAGCATTATTCTAGTGTTGCCATGCCACCATCTTCTGCATTTTGGCCTGCCCATGAATCCAAACAAGTGAACTTGAAAGGAACCAATTGCAATTCCTATTTGCCTCCATCATATATTGAAAATGCTAACTATCTATGCTTCTCCCAAGGGAGTAGCTCCAGTACTGAGAATGGTAATATGTATTCCTATGATACTGCAACAAATTTCGATTCCATGTCCACCGATTTTTGTTTAGAAGGTGCCAAGTTTAGTCCACAGTGTAACGATAACTCGAGGGCGCAGATAAATGGAATCATTGATGAAGATGCTAAGATAGAGTGTGAAAGGATGGTTTTTGAGCCTGCAGAGAACTTGCAGAACCCAGCAAAAAGGCTTAGGAGCTCATCTGAGGTCCCAAGAAACACGAGGAATGTTAAATCAAGGCAGGAGAATCCAATTCCTTCTTCTTACACAAGCAACAGTGAAGAAGATAAAAGCCCTGCAGGTCCCAAAAATAGAAGAAATAGCAGTGGTGCTGCCACAGATCCACAGAGCCTGTATGCAAGAAAAAGAAGAGAAAGGATAAATGAAAGATTGAGAATACTACAAACACTTGTCCCCAATGGAACTAAGGTGGATATCAGCACCATGCTTGAGGAAGCTGTCCATTATGTGAAGTTCTTACAGCTCCAAATTAAGCTTCTAAGCTCTGATGATCTATGGATGTATGCTCCAATTGCTTACAATGGAATTAACATTGGACTAGACCTCTCCATTACTCCTCCAACTAAAGCAAGCTGA 897 0.4125 MEPAQLISEEWGSLSGLYTAEEAEFMTQLLAGNNYSVSDKHYSSVAMPPSSAFWPAHESKQVNLKGTNCNSYLPPSYIENANYLCFSQGSSSSTENGNMYSYDTATNFDSMSTDFCLEGAKFSPQCNDNSRAQINGIIDEDAKIECERMVFEPAENLQNPAKRLRSSSEVPRNTRNVKSRQENPIPSSYTSNSEEDKSPAGPKNRRNSSGAATDPQSLYARKRRERINERLRILQTLVPNGTKVDISTMLEEAVHYVKFLQLQIKLLSSDDLWMYAPIAYNGINIGLDLSITPPTKAS 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30492g00001 298 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 211 276 IPR036638 GO:0046983
Stsc30492g00001 298 FunFam Basic helix-loop-helix transcription factor 212 269 - -
Stsc30492g00001 298 SMART finulus 217 266 IPR011598 GO:0046983
Stsc30492g00001 298 Gene3D - 214 269 IPR036638 GO:0046983
Stsc30492g00001 298 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 211 260 IPR011598 GO:0046983
Stsc30492g00001 298 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 63 283 - -
Stsc30492g00001 298 Pfam Helix-loop-helix DNA-binding domain 221 261 IPR011598 GO:0046983
Stsc30492g00001 298 CDD bHLH_AtIND_like 212 274 - -
Stsc30492g00001 298 MobiDBLite consensus disorder prediction 160 215 - -
Stsc30492g00001 298 MobiDBLite consensus disorder prediction 157 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30492g00001 Stsc-Chr30492 3875 5090 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30492g00001 10 287 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 38.372 9.23e-50 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc30492g00001 HLH 6.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30492g00001 - - adu:107467178 535.028