Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30489g00003 ATGGCTGTAACCGATAGGTGTTTCGTGGAATGGAAAGAGCAGTTTGTTTCCCAAGAGCGTGGCAACCGTGTGGTCCACTATTACCTGAAGGATTCTGATGGGGAATCCATACTTGCTGTTGTGGGAACTGAGAGGAGTGTTAGACACATGTTCTATGTTGTAGCTGATGAGTTTTTGGAAATTTGTGGGAAGGAAGGTTCTGTTCCTGCTGGTTTCAAATGGAGATCTAGAAGAGAGGTGGTTGATTGGCTGACGTCGACACTTTCAAAGAAGCATCTTCAGGGAGATAGAAGTGGTTCACCTAGTCATTCTTCAGGACAAGCTTATGAGACCACAAATGGTAGTGTCAATGAAATTACTGGTCTTCCTGCACCAATAGCGAATGGCAAGGGATTTCTAACCCGAAACTCCAAATTATCCAAGTCGGACATTGTTTGGTCTGGAGTGGCATGGACGTGTGGCAAGCAGCTTAAGCATTATCATGCTTTTTGCAGGAATGGCATCAAAATAATTGTTCAATCCTTTGTTTATGTCATGGGCAAGGGAGAGAATCATTACGTTGCTTATTTAGAGGATATGTATGAAGACAGGAGGGGGCAGAAAAAGGTGAAAGTGAGGTGGTTTCACCATAATCAGGAAGTCAAGGGTGTGATTCCAGTACGGAATCCACATCCTCGGGAAGTTTTCATCACACCATACTCTCAAGTCATTAGTGCAGAGTGTGTTGATGGTCCCACCACGGTCTTAAGTCGTGAACATTATGAAAAATGCATGCCTTGCTTTTCGCCAACTTCATTGGATAGAATACATATGTGCTTTAGGCAATTTAGAAGCAACAAAGTCAAGCCCTTTGATTTGAGTAAACTGCGTGGCTACTATGATCAGCCACTTCTTTCTTGCTTGCAATTCGATTCTATGCAGAAGTCTCCCAAGGGAAATAGCCTTGCAGGAGGAGATGAAGAGTTGAGTGCAGGTGAAAATTTAAAGCTCAGAGCCAAGAGAAGGGACAGGGGAACTCCTCAGTCTTTGATGGGACGCAAGGGAGTTAGGAAGTTAGTTAGGAGTCAGCAAATGATGGTATACAAAAACTCGCAAGGTGTAAATAATTCTAGGACAGATAGGAGATTGTTTTCTCGGAAGGAAGTTGAATCTCAACCTTGGTATAACGTCATGTACAAGATTGATGACAAGATAGAGGTTCTTTGTCAGGATAGTGGTATCAGAGGCTGCTGGTTCAGGTGTACAGTTGTGCAGGTATCTCGGAAACAGATGAAAGTCCAATACGATGATATTCAGGATGAAGATGGAAGTGGAAATCTTGAGGAATGGATACCTGCATTTAAGTTGGCCATGCCTGATAAACTTGGGATAAGACATCCTGGTCGATCGACAATTAGGCCAGCTCCTCCACCTTCCAACGACCAAGAGTTGGTTATTGGGGTTGGAACTGCAGTTGATGCGTGGTGGAGTGACGGCTGGTGGGAGGGTGTTGTAACCGGAACTGATAACTATGTTGATGATAATGTGCAATTGTACTTTCCTGGTGAAGGCTTGCTAATGAAAGTACACAAGAAAGATCTAAGAATATCTAGAGATTGGTCAGGGGACAGGTGGATTGATATTAAGCCGAAGTTTGATTTAACCTCGACTATATTCCCAGTTAACGGTGTTAACACGAAGCCTTGCACGTCCCCATCCCCTTCCATAGCTAAAGACGGGGACTCTATTGGTGCTGCAAATTCTTGTGATGAAGCTCTGGTGAGTGACGAGCCTATTAATAATGAACCTGATGTTTCTGAAGAGAAGGTTGTGTGTCATGAGGGTGTTGCTGAAGACGGAGATAAAAATGATGATGAAGATGATAATAGTAATCTTCCATCAGAAAAGGATACTGAAGTTGATAACAACGAGATTGAGATGAATAATATTGATAATGAAGATAATGGAGATGATTCTAACAAGGACAGCGAAAACGGTAATAAGGATACGGAGGTGTTTGGGACTTCCGTCGAGGAGGACTGTAAAACCGGAGAACCTGCTGCGGAAATGGCTGTATAA 2058 0.4325 MAVTDRCFVEWKEQFVSQERGNRVVHYYLKDSDGESILAVVGTERSVRHMFYVVADEFLEICGKEGSVPAGFKWRSRREVVDWLTSTLSKKHLQGDRSGSPSHSSGQAYETTNGSVNEITGLPAPIANGKGFLTRNSKLSKSDIVWSGVAWTCGKQLKHYHAFCRNGIKIIVQSFVYVMGKGENHYVAYLEDMYEDRRGQKKVKVRWFHHNQEVKGVIPVRNPHPREVFITPYSQVISAECVDGPTTVLSREHYEKCMPCFSPTSLDRIHMCFRQFRSNKVKPFDLSKLRGYYDQPLLSCLQFDSMQKSPKGNSLAGGDEELSAGENLKLRAKRRDRGTPQSLMGRKGVRKLVRSQQMMVYKNSQGVNNSRTDRRLFSRKEVESQPWYNVMYKIDDKIEVLCQDSGIRGCWFRCTVVQVSRKQMKVQYDDIQDEDGSGNLEEWIPAFKLAMPDKLGIRHPGRSTIRPAPPPSNDQELVIGVGTAVDAWWSDGWWEGVVTGTDNYVDDNVQLYFPGEGLLMKVHKKDLRISRDWSGDRWIDIKPKFDLTSTIFPVNGVNTKPCTSPSPSIAKDGDSIGAANSCDEALVSDEPINNEPDVSEEKVVCHEGVAEDGDKNDDEDDNSNLPSEKDTEVDNNEIEMNNIDNEDNGDDSNKDSENGNKDTEVFGTSVEEDCKTGEPAAEMAV 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30489g00003 685 MobiDBLite consensus disorder prediction 620 636 - -
Stsc30489g00003 685 ProSiteProfiles BAH domain profile. 168 287 IPR001025 GO:0003682
Stsc30489g00003 685 MobiDBLite consensus disorder prediction 556 570 - -
Stsc30489g00003 685 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 391 639 - -
Stsc30489g00003 685 Pfam BAH domain 170 276 IPR001025 GO:0003682
Stsc30489g00003 685 Gene3D - 135 287 IPR043151 -
Stsc30489g00003 685 MobiDBLite consensus disorder prediction 609 685 - -
Stsc30489g00003 685 MobiDBLite consensus disorder prediction 647 678 - -
Stsc30489g00003 685 SMART BAH_4 168 287 IPR001025 GO:0003682
Stsc30489g00003 685 MobiDBLite consensus disorder prediction 556 576 - -
Stsc30489g00003 685 SMART agenet_At_2 477 535 IPR014002 -
Stsc30489g00003 685 SMART agenet_At_2 390 455 IPR014002 -
Stsc30489g00003 685 CDD BAH_plant_1 163 292 - -
Stsc30489g00003 685 CDD Tudor_Agenet_AtDUF_rpt1_3 392 470 - -
Stsc30489g00003 685 Pfam Agenet domain 395 470 IPR008395 -
Stsc30489g00003 685 MobiDBLite consensus disorder prediction 92 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30489g00003 Stsc-Chr30489 27551 32235 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30489g00003 404 534 PHD Transcription Factor Family AT5G58610 30.597 2.55e-14 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30489g00003 - - gmx:100306240 925.235