Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30488g00004 ATGGCATTTCTCTCCCACTCTCCAAATTCAAACGCAATTGCCACATTTCATAACTGCCTCACCTTCGCCACCACCACCTCCACCGACGATCCTCTCTTACCATTCCTCTGGAATGTCAAGAAAGCTCTAGAAGGTACCGGCAGTTCCAACCAGAACCTGATTAACTTGCTAGAAGATTGCATTCGAAGCTTCAAGGATAGCGAACAGTACCGAAACGACGTCAGATTTCTCAAGATTTGGCTCCTCTATATGGGTGTTAGTTCAGATTTTGAAAGTGTTTTCAAGGAAATGCTGAACTGTAATGTGTGTACCAAAAATGCTTCACTCTATGTTTGGTCTGCAAGTTTCTTTGAATTGAAAGGGATGCTCCGTCATGCCCTCACAATCTATAACCTTGGCATCTCCAGAAACGCAGAGCCAATTGAGTGGTTGAAGAAGGCACATGCATTATGTCACCAGAGAATATCTGAAGCCTGGAGGGCTGCTAAAAGCCAGAAGATTGATCATAACGGATCCACAGAGTTGGGAAACACTGGCATTAATCCATGGGATTCCTCCATTATGGATGACCTGATGAAGAAGATAAATCTGATCATTAAAAAATTTCATGGGTATCATTTGAGCACTAAATCTTATACAGGGAGAGTGGCCTTATCTACTTTGAAGAATGCATCAAGGAACAAAGTTATAGAGATAGGCGGGAAGAAGTACCATATCAAAGGTTGTGCTGGACAGGGTGGTTTTGCTCAAGTATACAAGGCCTTTGTCAACAGTGATCCCAATGATGTTGTTGCACTAAAGATACAAAGGCCACCTTTCCCCTGGGAATTTTACATGTATCGTCAGCTTGATATGCGGATCACAGGCAGAGAAAGGTCAAGCTATGGTTTGGCTCATAGAATTCATCTGTATGCTGACTGTAGCATACTCATCTGTGACTATTTAGCTCATGGGACTCTACAGGATGTCATAAACACATATGTGGTCCAAAGGAAACCCATGGAAGAAGTATTATGCATTTATTACACGATAGAAATGTTACACATGGTTGAAACTTTGCATGGTGTTGGCTTGATTCATGGTGATTTCAAGCCTGATAATCTGCTTATTCGCTATGCTAGGGATAATCTTACTGAAGAAGGGTTCTTGGACCGAAGTGGTCCTTGGTGTGATCAGGGTCTTTGCCTTGTAGATTGGGGAAGAGGGATCGTTCTAGATCTCTTTCCAGATGACACAGTATTTAAGGGTGACTGCAGAACTTCTGGTTTTCGCTGCATTGAGATGCAAGAGAATATGCCATGGAAATTTCAGGTAGATGCATATGGCCTTTGTGTTGTTGTCCATATGATGTTGCATAACTGCTATATGGAGATTGCCAAACAAGGATCATCCGATAGCGGCTACATGTATCTTCCCAAACAACCGTTCAAACGTTACTGGAATGTTGCTCTCTGGAAGAATTTCTTCACCAAGATGCTAAATCAATACCCCAGCAATGACGATAGAAGGTTGCTGCAGGAGTTGAAAAAGTCCTTCCAGGACTATATAAGTTCCGATCCAAAAATGATAAAGACACTAAAGGAGTTACTTGCAAAGCAAAGGATTTCTATGTGTTCTGCTTAG 1623 0.4208 MAFLSHSPNSNAIATFHNCLTFATTTSTDDPLLPFLWNVKKALEGTGSSNQNLINLLEDCIRSFKDSEQYRNDVRFLKIWLLYMGVSSDFESVFKEMLNCNVCTKNASLYVWSASFFELKGMLRHALTIYNLGISRNAEPIEWLKKAHALCHQRISEAWRAAKSQKIDHNGSTELGNTGINPWDSSIMDDLMKKINLIIKKFHGYHLSTKSYTGRVALSTLKNASRNKVIEIGGKKYHIKGCAGQGGFAQVYKAFVNSDPNDVVALKIQRPPFPWEFYMYRQLDMRITGRERSSYGLAHRIHLYADCSILICDYLAHGTLQDVINTYVVQRKPMEEVLCIYYTIEMLHMVETLHGVGLIHGDFKPDNLLIRYARDNLTEEGFLDRSGPWCDQGLCLVDWGRGIVLDLFPDDTVFKGDCRTSGFRCIEMQENMPWKFQVDAYGLCVVVHMMLHNCYMEIAKQGSSDSGYMYLPKQPFKRYWNVALWKNFFTKMLNQYPSNDDRRLLQELKKSFQDYISSDPKMIKTLKELLAKQRISMCSA 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30488g00004 540 ProSitePatterns Serine/Threonine protein kinases active-site signature. 358 370 IPR008271 GO:0004672|GO:0006468
Stsc30488g00004 540 SMART serkin_6 237 516 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30488g00004 540 Gene3D Transferase(Phosphotransferase) domain 1 234 538 - -
Stsc30488g00004 540 Pfam Mad3/BUB1 homology region 1 26 134 IPR013212 -
Stsc30488g00004 540 ProSiteProfiles BUB1 N-terminal domain profile. 18 175 IPR013212 -
Stsc30488g00004 540 PANTHER MITOTIC CHECKPOINT SERINE/THREONINE-PROTEIN KINASE BUB1 173 534 IPR015661 GO:0007094
Stsc30488g00004 540 Pfam Protein kinase domain 237 456 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30488g00004 540 SMART mad3_bub1_i 9 134 IPR013212 -
Stsc30488g00004 540 SUPERFAMILY Protein kinase-like (PK-like) 234 510 IPR011009 -
Stsc30488g00004 540 ProSiteProfiles Protein kinase domain profile. 237 535 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30488g00004 540 Gene3D - 16 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30488g00004 Stsc-Chr30488 38010 42599 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30488g00004 231 370 MAP Kinase Kinase Kinase Kinase AT3G15220 28.082 4.68e-08 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK BUB Stsc30488g00004 Pkinase 9.7e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30488g00004 K02178 - gmx:100802272 818.15