Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30486g00008 ATGATGCAGCCCGGACCCGGCATGGCTCCTCCACCCAGCATGGCCCAACAGCCCAACCAGCAGTACCAGCAGCAGCAACCACCATACATGATGATGCCTCCGCAGGCCCAGCCACCTGCCATGTGGGCTCCCTCCGCCCAGGCCCCGCCACAGTCGGTGCCTCCTTCCCAGCCCGTTCAGCCCGCCAGCGCTGATGAGGTCCGCACCCTCTGGATCGGCGATTTGCAGTACTGGATGGACGAGAACTACCTCTACACCTGTTTTGCTCACACCGGCGAGGTGGCATCTGTTAAAGTAATTAGGAATAAGCAAACTAGTCAATCTGAGGGTTATGGGTTCATTGAATTTACAAGCCGTGCTGCTGCTGAGAGAGTACTACAAACATACAATGGCACCATTATGCCAAACGGCGGGCAGAACTTCAGGTTGAACTGGGCAACATTCAGCGCTGGTGAGAGGCGTCATGATGATAGTCCAGATTACACCATATTTGTTGGAGATTTGGCTGCAGATGTTACGGACTACCACCTGCAGGAGACATTTAGGGGTAGATACTCCTCAGTTAAGGGAGCCAAAGTTGTAATTGACAGGCTTACTGGGCGGACAAAGGGCTATGGTTTTGTTAGGTTTGCAGATGAGAGTGAGCAAATTAGAGCTATGACTGAAATGCAGGGGGTTCTTTGTTCAACAAGGCCCATGAGGATTGGACCAGCGTCTAATAAAAACCCAACTACACAATCCAAAGCTTCATATCAGAATCCTCAAGGGGCACAGAACGAGAATGATCCAAATAATACAACTATTTTTGTTGGCAATTTAGATGCTAATGTTACGGATGACCACCTGCGACAAGTCTTTAGCCATTATGGAGAGTTAGTTCATGTGAAGATTCCATCTGGCAAGAGATGTGGATTTGTCCAATTTGCAGACAGGAGTTCTGCTGAAGAGGCACTGAGGGTTTTGAATGGCACAGTTTTAGGTGGGCAAAATATTAGGCTATCATGGGGACGGAGTCCATCGAACAAGCAGACTCAAGCAGACCCAAACCAGTGGAATGGTAGTGGATATTATGGCTATGCACAAGGCTATGAAAACTATGGTTATGCTCCCGCTGGACAGGACCCCAACATGTATGGAAGCTATCCAGGGTATGCGAATTACCAACCTCCTCAGCAGCAGCAGCAACAAATGGGATATAGTTAA 1203 0.4921 MMQPGPGMAPPPSMAQQPNQQYQQQQPPYMMMPPQAQPPAMWAPSAQAPPQSVPPSQPVQPASADEVRTLWIGDLQYWMDENYLYTCFAHTGEVASVKVIRNKQTSQSEGYGFIEFTSRAAAERVLQTYNGTIMPNGGQNFRLNWATFSAGERRHDDSPDYTIFVGDLAADVTDYHLQETFRGRYSSVKGAKVVIDRLTGRTKGYGFVRFADESEQIRAMTEMQGVLCSTRPMRIGPASNKNPTTQSKASYQNPQGAQNENDPNNTTIFVGNLDANVTDDHLRQVFSHYGELVHVKIPSGKRCGFVQFADRSSAEEALRVLNGTVLGGQNIRLSWGRSPSNKQTQADPNQWNGSGYYGYAQGYENYGYAPAGQDPNMYGSYPGYANYQPPQQQQQQMGYS 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30486g00008 400 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 70 135 IPR000504 GO:0003723
Stsc30486g00008 400 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 163 226 IPR000504 GO:0003723
Stsc30486g00008 400 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 268 332 IPR000504 GO:0003723
Stsc30486g00008 400 SMART rrm1_1 69 144 IPR000504 GO:0003723
Stsc30486g00008 400 SMART rrm1_1 162 236 IPR000504 GO:0003723
Stsc30486g00008 400 SMART rrm1_1 267 334 IPR000504 GO:0003723
Stsc30486g00008 400 FunFam Polyadenylate-binding protein RBP45 11 152 - -
Stsc30486g00008 400 SUPERFAMILY RNA-binding domain, RBD 29 149 IPR035979 GO:0003676
Stsc30486g00008 400 MobiDBLite consensus disorder prediction 379 400 - -
Stsc30486g00008 400 FunFam Polyadenylate-binding protein RBP45C 245 370 - -
Stsc30486g00008 400 SUPERFAMILY RNA-binding domain, RBD 156 253 IPR035979 GO:0003676
Stsc30486g00008 400 Gene3D - 10 152 IPR012677 -
Stsc30486g00008 400 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 68 148 IPR000504 GO:0003723
Stsc30486g00008 400 MobiDBLite consensus disorder prediction 385 400 - -
Stsc30486g00008 400 MobiDBLite consensus disorder prediction 1 61 - -
Stsc30486g00008 400 FunFam Polyadenylate-binding protein RBP45C 153 244 - -
Stsc30486g00008 400 CDD RRM1_SECp43_like 69 149 - -
Stsc30486g00008 400 MobiDBLite consensus disorder prediction 235 265 - -
Stsc30486g00008 400 MobiDBLite consensus disorder prediction 14 30 - -
Stsc30486g00008 400 CDD RRM2_SECp43_like 160 239 - -
Stsc30486g00008 400 Gene3D - 153 247 IPR012677 -
Stsc30486g00008 400 MobiDBLite consensus disorder prediction 232 265 - -
Stsc30486g00008 400 MobiDBLite consensus disorder prediction 31 57 - -
Stsc30486g00008 400 SUPERFAMILY RNA-binding domain, RBD 252 362 IPR035979 GO:0003676
Stsc30486g00008 400 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 266 338 IPR000504 GO:0003723
Stsc30486g00008 400 Gene3D - 248 347 IPR012677 -
Stsc30486g00008 400 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 60 342 - -
Stsc30486g00008 400 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 161 240 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30486g00008 Stsc-Chr30486 43674 47747 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30486g00008 67 345 Eukaryotic Initiation Factors Gene Family AT2G23350 28.070 8.44e-30 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30486g00008 - - aprc:113864230 642.884