Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30485g00005 ATGTCTTCCTTCGGTTTTTTATCACCCTTTGACGATATTTCTCAGAGCCCACCATCTCCACCACCCCCATCCGAATCATCTTCATCATCACCCTCGCCACCCTCTGAGGATTCCTCCTCAACACCCTCACCACCCCCGCCACCCTCCCAAGATTCCTCTACTCCTGATAACCAATCTTCAGGATCATCATCCTCCGGCCAGGCGCTAGTACCTTCTCCTCCACGATCCTCCTCACATGGAAGCAAATCAGGGTTTAAGGGTCTTGGAGGTCTCGTCGGTAGTGGTACCAAGCACATTGCAATATATGCTTCAATAGGAGTTGTCTTTGTCATCATTATCGCCATAATTATTGTTTGCATAAGAAGAAGGTCCAAAAAGAAGCAGCAGCAGCAACACAAGATGTACTATTACGGTGGAGATTCATCCGAACAACAAAAATCTAACTACTACTACTACAACAACAACAACGGTGGCAAGAATCAAAGCTACTATGGTGGAGGAGGAGGGGGAGGAGGTGGTGGTCAAGCAAATCAAGAACATGTGGTGAAGATGCCAAATGGAATGATGGGAATAGGAATGGCGGGTCCACCAGGTCCTGGTCCTGCTTGGGGTGCAGCACCGCCACCTCCTATGATGTCAAACAGCTCAGATCTGAGCTCCAATTTCTCCATGGGACCTGCTCTTCCTCCTCCGTCACCTGGTCTTGCATTAGGCCTCAAGGGTGGTGGCACCTTCACCTACGATGAGCTTGCAATGGCAACGGGTAACTACTCAGATGCAAACATGATTGGGCAAGGTGGATTCGGTTACGTGTACAAGGGAGTGTTCCCTAACGGAAAGGTGGTGGCAGTTAAGACTCTCAAGGCAGGTAGTGGACAAGGTCAGCGTGAGTTCCAGGCTGAGATTGAGATCATCAGCCGTGTTCATCATCGCCATCTTGTTTCACTTGTTGGTTACTGCATTGCTGGTGGCCAGAGAATGTTGGTCTATGAATTCATCCCTAATAATACCTTGGAATATCACCTTCATGCTAAGGGTCTCCCTACCATGGATTGGCCTACCAGAATGCGCATTGCTATTGGAGCTGCTAAGGGACTTGCTTATCTTCATGAAGATTGTCATCCTCGCATCATCCATCGTGACATCAAAGCTGCAAATGTCCTTCTTGATGATAGCTTCGAAGCAAAGGTGGCTGATTTTGGATTGGCTAAGTTGACCACAGATAATAACACTCATGTATCAACTCGTGTCATGGGAACATTCGGGTACTTAGCTCCTGAATATGCATCAAGCGGAAAATTGACAGAGAAGTCTGACGTGTTCTCGTTCGGAGTGATGCTATTAGAAATTCTAAGTGGAAAACGCCCTGTGGATGTCTCTGGCGCCATGGATGATAGCTTAGTGGACTGGGCTCGACCACTACTGAAACGTGGATTAGAAGAAGATGGAAACTTTGGAGAGTTGGTAGATCCATTTTTGGAAGGAAACTTGAACAAACAAGAAATGACAAGGATGGCAGCTTGCGCTGCTGCCAGCATCCGCCACTCTTCCAAGAAGCGTCCAAGAATGAGTCAGATTGTAAGGATTTTGGACGGAGATGTGTCATTGGATGACTTGAAGAATAATATGGGTAATCAGGCAGGTGGAAGTGGTGGTGGTGTTGTGAACCGTTCTGCATCTGGGTCTGGAGGAGGGAGCAATGACTATGACACAATGCAGTACAATGCTGATTTACAGAAGTTCAGAAAGGCTGTGTATTCATCAAGCCAGGAATATACAAGCAGCAGTACCTCTAGTAGTGGTGAGAGGCCATAA 1815 0.4738 MSSFGFLSPFDDISQSPPSPPPPSESSSSSPSPPSEDSSSTPSPPPPPSQDSSTPDNQSSGSSSSGQALVPSPPRSSSHGSKSGFKGLGGLVGSGTKHIAIYASIGVVFVIIIAIIIVCIRRRSKKKQQQQHKMYYYGGDSSEQQKSNYYYYNNNNGGKNQSYYGGGGGGGGGGQANQEHVVKMPNGMMGIGMAGPPGPGPAWGAAPPPPMMSNSSDLSSNFSMGPALPPPSPGLALGLKGGGTFTYDELAMATGNYSDANMIGQGGFGYVYKGVFPNGKVVAVKTLKAGSGQGQREFQAEIEIISRVHHRHLVSLVGYCIAGGQRMLVYEFIPNNTLEYHLHAKGLPTMDWPTRMRIAIGAAKGLAYLHEDCHPRIIHRDIKAANVLLDDSFEAKVADFGLAKLTTDNNTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSFGVMLLEILSGKRPVDVSGAMDDSLVDWARPLLKRGLEEDGNFGELVDPFLEGNLNKQEMTRMAACAAASIRHSSKKRPRMSQIVRILDGDVSLDDLKNNMGNQAGGSGGGVVNRSASGSGGGSNDYDTMQYNADLQKFRKAVYSSSQEYTSSSTSSSGERP 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30485g00005 604 SMART serkin_6 257 518 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30485g00005 604 MobiDBLite consensus disorder prediction 541 571 - -
Stsc30485g00005 604 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 106 587 IPR047117 -
Stsc30485g00005 604 MobiDBLite consensus disorder prediction 53 82 - -
Stsc30485g00005 604 ProSiteProfiles Protein kinase domain profile. 257 518 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30485g00005 604 ProSitePatterns Serine/Threonine protein kinases active-site signature. 377 389 IPR008271 GO:0004672|GO:0006468
Stsc30485g00005 604 Gene3D Phosphorylase Kinase; domain 1 237 332 - -
Stsc30485g00005 604 ProSitePatterns Protein kinases ATP-binding region signature. 263 285 IPR017441 GO:0005524
Stsc30485g00005 604 MobiDBLite consensus disorder prediction 14 29 - -
Stsc30485g00005 604 Pfam Protein tyrosine and serine/threonine kinase 261 465 IPR001245 GO:0004672|GO:0006468
Stsc30485g00005 604 FunFam Proline-rich receptor-like protein kinase PERK8 236 332 - -
Stsc30485g00005 604 MobiDBLite consensus disorder prediction 37 52 - -
Stsc30485g00005 604 MobiDBLite consensus disorder prediction 1 82 - -
Stsc30485g00005 604 FunFam Proline-rich receptor-like protein kinase PERK1 333 541 - -
Stsc30485g00005 604 Gene3D Transferase(Phosphotransferase) domain 1 333 545 - -
Stsc30485g00005 604 SUPERFAMILY Protein kinase-like (PK-like) 242 530 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30485g00005 Stsc-Chr30485 18650 20959 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30485g00005 232 586 Trihelix Transcription Factor Family AT1G70460 58.989 4.14e-144 432
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Stsc30485g00005 PK_Tyr_Ser-Thr 8.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30485g00005 - - gmx:100777163 569.311