Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30485g00003 ATGGCGACCAATGTCCAAGTGAAGGAAGAGGAATCTGTTGATTCTCCCACTTCCGTCCTTGAAGACGAGGATGCTTGTGGTATGAAAGATGAAGTTAAGTCTGAGGGAGCGCAGTCTGAGGAGGGAGCGCAGTCTGAGGAGGCCCCTGACCTCACTGAAACCCAGTTTAACAAATTGGATGAGCTTTTAACCCAAACCAAGCTCTATTCCGAGTTTCTGCTGGAGAAAATGGACGACATCACACTTAATAAGGAGGTTAAGCAAGAGAACGAGGCAGAAGAGAAGGTAGTTGCAAGGGGACGGTCCTCTAAAAGGAAAGCAGCTTCCCAGTGCAATACTAAGAGGGCTAAAAGGGCAGTTGTTGCCATGCTTACAAGATCAAAAGAAAGTGTGAAGATAGAAGATATTAACATGACTGAGGAGGAAAGAATTGAGAAAGAACAAAAGGAGCTGATGCCTTTACTCACGGGTGGAAAATTGAAGTCTTATCAGCTTAAAGGTGTAAAGTGGTTGATTTCACTGTGGCAAAATGGGTTGAATGGGATTCTTGCTGATCAAATGGGTCTTGGGAAGACCATTCAAACAATTGGGTTTCTTTCACATCTAATAGGGAAAGGTCTGCATGGGCCATACATGATAATTGCTCCTCTAAGTACCCTCTCAAATTGGAACAATGAGATTTCTAGGTTTGCACCATCACTTCCTGCAATTGTCTACCATGGCACTGGGCAACAGAGAGATGAAATCCGGCGGAAACATATGCCTAGAACCATTGGCCCCAAATTCCCCATAGTAATTACTTCCTATGAGATTGCTTTAAATGATGCTAGGAAACATTTAAGGCATTACCCTTGGAAGTATCTTGTTGTTGATGAGGGACACCGACTCAAAAACTCAAAGTGTAAATTGGTGAAGGAGTTGAAATGGATAAATGCACAGAACAAGCTACTTCTATCAGGGACTCCTCTTCAGAATGACTTGGCTGAGCTATGGTCACTGTTGAACTTCATTTTACCCGATATTTTTGCTTCGCTTGAAGAATTTAAGTCATGGTTTAATCTATCAGGAAAGTGCAACAATGGAGCAACCAAGGAAGAATTAGAAGAGACAAGAAGAGGCCAAGTGGTGACCAAGCTTCATGCCATACTTCGGCCCTTTCTCTTGCGCAGAATGAAGGCTGATGTTGAGATCTCATTGCCAAGAAAGAAGGAGATCATTATTTATGCAACTATGACCGAGCATCAGAAGAATTTGCAGGATCATTTAGTTAACAAGACATTGGAGAACCATTTTGCAGAAAAGAAGTCAATTGGACGTGGAATAAAGACGCTTAATAATTTGGTCATTCAACTTAGGAAAGTCTGTAATCATCCTGACCTCTTAGAGTCTGCCTTTGATGATTCATATTTTTATCCTCCTGTGGATGAGATAGTTACCCAATGTGGAAAATTTCGTTTGCTTGAACGGTTGTTGGAAAGGTTATTTGCAAGGGATCACAAAGTTTTGATATTCAGTCAGTGGACTAAAGTGTTAGACATAATGGATTACTATTTTAGTGAGAAGGGCTTTGAAGTTTGTAGGATTGATGGCAATGTGAAATTGGATGAAAGGAAACGACAGATCCAAGAATTCAATGATGAAAACAGCAATTGCAGAATCTTCCTTCTTTCTACTAGGGCTGGTGGACTAGGAATTAACCTCACTGCTGCTGATACATGCATTCTTTATGACAGTGATTGGAATCCTCAGGCAGACTTGCAGGCCATGGATAGATGTCATAGAATTGGTCAAACAAAACCAGTTCATGTTTACAGGCTCTCGACTGCCCAATCTGTTGAGGGTCGCATGTTGAAAAGAGCTTTTAGCAAGTTGAAACTTGAACATGTGGTGCTCGAGAAAGGACAGTTTCATCAAGATCGCACAAAGACGCTCAATGGGAATGAAATTGAGGAACAAGATATTTTGGCATTGCTTCAAGATGAGGATACAGCTGAAGATAAATTGATACAAACAGATATTAGTGATGAAGATTTGGATAAGCTGTTGAATCGCAGTGATCTTATTTCTCCAAATCAAAATGATGACGACGAGGAATTCAAAGCTCCATGCGATGCATTTCCTCTTAAAGGACCTGGGTGGGAGGTTGTAATTCCGACGGCAACTGGGGGCATGCTTTCTACTCTTAACAGTTAA 2193 0.4145 MATNVQVKEEESVDSPTSVLEDEDACGMKDEVKSEGAQSEEGAQSEEAPDLTETQFNKLDELLTQTKLYSEFLLEKMDDITLNKEVKQENEAEEKVVARGRSSKRKAASQCNTKRAKRAVVAMLTRSKESVKIEDINMTEEERIEKEQKELMPLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIGFLSHLIGKGLHGPYMIIAPLSTLSNWNNEISRFAPSLPAIVYHGTGQQRDEIRRKHMPRTIGPKFPIVITSYEIALNDARKHLRHYPWKYLVVDEGHRLKNSKCKLVKELKWINAQNKLLLSGTPLQNDLAELWSLLNFILPDIFASLEEFKSWFNLSGKCNNGATKEELEETRRGQVVTKLHAILRPFLLRRMKADVEISLPRKKEIIIYATMTEHQKNLQDHLVNKTLENHFAEKKSIGRGIKTLNNLVIQLRKVCNHPDLLESAFDDSYFYPPVDEIVTQCGKFRLLERLLERLFARDHKVLIFSQWTKVLDIMDYYFSEKGFEVCRIDGNVKLDERKRQIQEFNDENSNCRIFLLSTRAGGLGINLTAADTCILYDSDWNPQADLQAMDRCHRIGQTKPVHVYRLSTAQSVEGRMLKRAFSKLKLEHVVLEKGQFHQDRTKTLNGNEIEEQDILALLQDEDTAEDKLIQTDISDEDLDKLLNRSDLISPNQNDDDEEFKAPCDAFPLKGPGWEVVIPTATGGMLSTLNS 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30485g00003 730 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 131 390 IPR027417 -
Stsc30485g00003 730 MobiDBLite consensus disorder prediction 1 52 - -
Stsc30485g00003 730 FunFam Chromatin complex subunit A 106 400 627 - -
Stsc30485g00003 730 Gene3D - 396 699 IPR027417 -
Stsc30485g00003 730 CDD SF2_C_SNF 472 606 - -
Stsc30485g00003 730 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 392 697 IPR027417 -
Stsc30485g00003 730 Pfam SNF2-related domain 163 460 IPR000330 GO:0005524|GO:0140658
Stsc30485g00003 730 PANTHER SNF2/RAD54 HELICASE FAMILY 20 682 - -
Stsc30485g00003 730 SMART ultradead3 156 351 IPR014001 -
Stsc30485g00003 730 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 486 632 IPR001650 -
Stsc30485g00003 730 MobiDBLite consensus disorder prediction 23 37 - -
Stsc30485g00003 730 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 172 340 IPR014001 -
Stsc30485g00003 730 FunFam ATP-dependent DNA helicase DDM1 154 399 - -
Stsc30485g00003 730 SMART helicmild6 512 596 IPR001650 -
Stsc30485g00003 730 Gene3D - 161 391 IPR038718 -
Stsc30485g00003 730 Pfam Helicase conserved C-terminal domain 486 596 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30485g00003 Stsc-Chr30485 6778 11497 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30485g00003 108 617 RAD5 or RAD16-like Gene Family AT1G02670 26.460 9.50e-43 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Stsc30485g00003 SNF2_N 2.4e-63 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30485g00003 K19001 - gmx:100777687 1145.57