Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30484g00006 ATGGCCATGGACAATTTAAGAACGTTACTTATATGGTTCTTTCTCATGGCCTGCATGAGAACCACTACTTCATCAGACAGCCTAGGAATTGTTCAATATATCCGAGATGGCGAATCTCTAGTCTCAGCTGGTGGAAGCTTTGAACTTGGTTTCTTCAGCCCCGGAACTTCGACAAATCGATATTTGGGTGTGTGGTACAGAGATACATCAGGGAATCCAACAGTTGTTTGGGTGGCTAACAGAGAAAGACCCCTTCACAACAAGTCAGGAGTTTTGCAACTCAACAAAATGGGGATTCTTCAGCTTCTTGATGAGACAAACAACACTGTTTGGTCATCCAACATATCCAGCAAATCATGGAGTAACTCAGTTGCAAGGATTTTGGATTCAGGTAATCTTGTAGTGACAAATGGACAAGATACTTATAACAGCAGCTTTTTGTGGCAGAGTTTTGATTACCCTTGTGACACATTGATGCCTGGAATGAAAATTGGATGGAACTTTGTTACTGGTCAAGAAAAATATATATCAAGCTGGAAAAGTGAAGAAGATCCTGCTGTGGGAGAGTATGCTATAAAACTTGATCCTAGAGGGTATCCACAAATAATGATAATGAAGGGATCTCTTATATATTTCAGAGGTGGATCATGGAATGGTCTTTACTTTACAGGATCTCCATCTCAGAACACACAAACATTTAAATCCAATTTTGTATTGAATGGAAAAGAGGTGTATTATGATTTTGAAATGCTTGATACTTCCATTTTCACAGTACTTAAAGAATACTCTTCAGGTGATGGACAATATCTTGTTTGGACAAGCCAAACAAGAAACAAGGTGCAAGCTACCGAGGTTTCGAACCAAGGAGGGTGTGACAGGTATGCCTATTGTGGTTCAAATTCTATATGCATTGTGGATAGTAATGTTGCAATATGCAAATGTCTGAAAGGATATATTCCCAATCCCAAGCTTTCTAAACAAGAAAATATGTCATATTGGTCCAATGGTTGTGTTAGAAAGGATGCATTGGATTGTAATAACACTGATGGCTTCTTGAGCTACACAGGCATAAAATTGCCAGACACGTCTTCTTCATGGTATAGTGAGACAATGAACCTCCAGGAATGTCAAAAGTTTTGCCTGAAAAATTGTTCTTGTTCAGCATATTCAAGTTTGGATATTCGTAATGGTGGAAGTGGTTGTCTAATTTGGTTTGATAATCTTACTGACATTATACAATTCTCACAAGGGGGTCAAGAATTTTACCTGAGAGTCCCTTCTTCAGAATTGGGGGCAACGAAAATAATTTACAGAGAAAAACAAATGCAAGAAGATATTGATCTACCAGCATTCAATTTCTCAGTCTTAGCTAAAGCTACAGAAAACTTTTCAAGCAGTAACAAACTTGGAGAAGGAGGTTTTGGAGAAGTATACAAGGGTACATTGACTGGTGGTCAAGAGTTAGCTCTAAAAAGACTTTCAAAAAAGTCCGGCCAAGGGTTGGAAGAGTTCAAAACCGAAGTAGCGTTGATAGCGAAACTTCAACATCGTAATCTTGTAAAGCTTCTTGGTTTTTGCATTCAAGGAGTAGAAAAGATATTGGTCTATGAATACATGCCGAACAAAAGCCTCGACTACTTCATTTCTGATGAGATTAGAAGGAAGTTGCTAGATTGGCCTAAACGTTTCAACATTATTAGCGGCATTGCTCGTGGACTTCTTTATCTTCATCAAGATTCTAGACTAAGGATTATTCATAGAGACCTAAAAACGAGCAATATTTTGCTAGATGCAAATTTGAATCCTAAAATATCAGACTTTGGCTTGGCTCGAACATTCTTAGGTGATCAATTGGAGGCTAACACAAATAGGATAGCTGGAACATATGGTTACATGCCTCCTGAGTATGCAGTACACGGTCAATTCTCAATGAAGTCTGATGTGTTTAGCTATGGTGTGATAGTACTAGAGTTGTTAAGTGGGAAGAAGAACAGGGAATTCTCCGACCCGGAAAACTACCTTAATCTTCTTGGACATGCATGGAGATTATGGAATGAAGAGAGGCCATTGGAGCTATTGGATGAATTGTTAAAGGAAGGATCATGCACTCATTCTGAAGTCATAAGATGCATACAAGTGGGGCTACTATGTGTGCAACAAAGACCAGAAGATAGACCAGACATGTTATCTGTGGTTCTAATGCTAAATGGTGAGAAATTGCTACCCAAGCCACAGGTCCCTGGTTTTTATATTGAAAGAGGTGTTACAATTGAAGCAGATACAATGTTGGGAAATGGCACACCATTTTCAGCCAATGAAATTTCCATGACATTGTTAGAAGCAAGATAG 2349 0.3874 MAMDNLRTLLIWFFLMACMRTTTSSDSLGIVQYIRDGESLVSAGGSFELGFFSPGTSTNRYLGVWYRDTSGNPTVVWVANRERPLHNKSGVLQLNKMGILQLLDETNNTVWSSNISSKSWSNSVARILDSGNLVVTNGQDTYNSSFLWQSFDYPCDTLMPGMKIGWNFVTGQEKYISSWKSEEDPAVGEYAIKLDPRGYPQIMIMKGSLIYFRGGSWNGLYFTGSPSQNTQTFKSNFVLNGKEVYYDFEMLDTSIFTVLKEYSSGDGQYLVWTSQTRNKVQATEVSNQGGCDRYAYCGSNSICIVDSNVAICKCLKGYIPNPKLSKQENMSYWSNGCVRKDALDCNNTDGFLSYTGIKLPDTSSSWYSETMNLQECQKFCLKNCSCSAYSSLDIRNGGSGCLIWFDNLTDIIQFSQGGQEFYLRVPSSELGATKIIYREKQMQEDIDLPAFNFSVLAKATENFSSSNKLGEGGFGEVYKGTLTGGQELALKRLSKKSGQGLEEFKTEVALIAKLQHRNLVKLLGFCIQGVEKILVYEYMPNKSLDYFISDEIRRKLLDWPKRFNIISGIARGLLYLHQDSRLRIIHRDLKTSNILLDANLNPKISDFGLARTFLGDQLEANTNRIAGTYGYMPPEYAVHGQFSMKSDVFSYGVIVLELLSGKKNREFSDPENYLNLLGHAWRLWNEERPLELLDELLKEGSCTHSEVIRCIQVGLLCVQQRPEDRPDMLSVVLMLNGEKLLPKPQVPGFYIERGVTIEADTMLGNGTPFSANEISMTLLEAR 782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30484g00006 782 CDD PAN_AP_plant 343 426 - -
Stsc30484g00006 782 SMART blect_4 31 154 IPR001480 -
Stsc30484g00006 782 PIRSF SRK 431 782 IPR024171 GO:0004674
Stsc30484g00006 782 PIRSF SRK 1 445 IPR024171 GO:0004674
Stsc30484g00006 782 SUPERFAMILY Protein kinase-like (PK-like) 446 735 IPR011009 -
Stsc30484g00006 782 ProSitePatterns Serine/Threonine protein kinases active-site signature. 584 596 IPR008271 GO:0004672|GO:0006468
Stsc30484g00006 782 ProSiteProfiles Bulb-type lectin domain profile. 25 148 IPR001480 -
Stsc30484g00006 782 Gene3D - 20 151 IPR036426 -
Stsc30484g00006 782 ProSiteProfiles PAN/Apple domain profile. 345 427 IPR003609 -
Stsc30484g00006 782 Gene3D Transferase(Phosphotransferase) domain 1 539 741 - -
Stsc30484g00006 782 CDD STKc_IRAK 469 737 - -
Stsc30484g00006 782 ProSitePatterns Protein kinases ATP-binding region signature. 469 491 IPR017441 GO:0005524
Stsc30484g00006 782 SMART serkin_6 463 733 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30484g00006 782 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 429 538 - -
Stsc30484g00006 782 Pfam Protein tyrosine and serine/threonine kinase 466 731 IPR001245 GO:0004672|GO:0006468
Stsc30484g00006 782 ProSiteProfiles Protein kinase domain profile. 463 741 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30484g00006 782 SUPERFAMILY alpha-D-mannose-specific plant lectins 75 185 IPR036426 -
Stsc30484g00006 782 FunFam - 539 744 - -
Stsc30484g00006 782 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 9 722 - -
Stsc30484g00006 782 Pfam D-mannose binding lectin 74 180 IPR001480 -
Stsc30484g00006 782 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 20 151 - -
Stsc30484g00006 782 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 344 425 - -
Stsc30484g00006 782 CDD B_lectin 31 154 IPR001480 -
Stsc30484g00006 782 Gene3D Phosphorylase Kinase; domain 1 429 538 - -
Stsc30484g00006 782 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 18 - -
Stsc30484g00006 782 Pfam S-locus glycoprotein domain 212 321 IPR000858 GO:0048544
Stsc30484g00006 782 Pfam PAN-like domain 345 411 IPR003609 -
Stsc30484g00006 782 Gene3D Hepatocyte Growth Factor 341 423 - -
Stsc30484g00006 782 SMART ntp_6 346 425 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30484g00006 Stsc-Chr30484 44656 48295 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30484g00006 451 782 Receptor kinase-like Gene Family AT4G23140 56.851 1.79e-128 397
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc30484g00006 PK_Tyr_Ser-Thr 1.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30484g00006 - - aip:107614884 1472.22