Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30484g00002 ATGGGGTTGAAGCTGATTCTGCTTCTTCTGATTAATCTACATTTAGTGCTGAGCACTCAACAGCTTCATGAATATGAAGCTACAAATCCACACCATTCCAGAGCAAGAAATCAGTTTAGTATTGCAATCCCACCATCAAAGTCAACTTCTGGAGTTTCTGAAAGCACTGCACATTCACCTTCTGAATCATCTTCCAGTGTTCCTGTGAGTATTGCAATGCCTCCTTCTAAGCCAATTCAAAGAACTCATGCAAGGAAATGGACACATAGTTCTGTGGATTCTCCAGTATCACATCATAAGCATCACCATTCAGGAAAAAGATCTGGCAACCGGATCCCTGCGGCTGCGCCGGCCTATCCAATCCATCCTCCTACTTACAGCTATCAAGGTCCTTCATCAGTCTCCAAATTGCAACCTCCATTTTCTTCACCAAATAACCATGATTTTCGCGCACCTGCTCCGTCACCAGTGGCTATGTCAAGCCACCTTAATGTGCCCTCTCCTTCACCTAGAATTTCACCTCTGAGTTCATCATTTAAGAAGGCTAAGGCTCAGCCACCAGCTGCATATTCTTTCGTTCTGCCACCTCCACCTCCTAATAAGGATTGTTTGTCCATGACTTGCTCTGATCCCTTGACATACACGCCTCCCGGTTCGCCTTGTGGTTGTGTATTACCTCTTCAAGTAAAACTCCAAATTGGCATTGCAATATCCAAGTTTTTTCCTTTGGTTACAAAGCTGGCTGAGGAAGTTGCAGTTGGTCTTTCGCTGAATCGCAGCCAAGTTCGCATTGTAGGAGCTGATGCTGCTAATCTACAACTAGAGAAAACCAATGTTCTCATAAACTTGGTACCAACAGGAGTGAAATTCAATGACACCATCGCTTTTTCCATATATCAGAAATTCTGGCACAAGAAGGTTCTTAGGCATGCTTCACTCTTTGGTGCTTATGAAGTGCTCTATGTCCAATACCCAGGTCTTCCACCATCGCCACCCTCTGCGTCCGGTGATATAGACAATGGGCCATATACCGGTGGCGATAGCAATGGAACGATAATGAAACCTTTAGGAGTAGATGTCTCAGGGAAGACAAAAGGAGAGAGTAATAATGGGAGAATGATTGTTGTAATAGTACTGTCATCAGTTACTGCTTTTGTTATATTCATTGGACTAGCTTGGCTTGCTTTATTGAAGTATAGATCCTGTGTCATCAAACCGGAACAAGGTCCAGATGTTTTGGTTTCACCCTCTTCAAAACAATCTGGTACTCCTACAGAATTGGCTCATGGGAAGATGCAAAGTTCAGGATCACTGTCCTTCAATTCAGGGTCAATAACATACACAGGAGCTGCTAAGATTTTTTCATTGAATGAGTTAGAGAAAGCAACAAACAACTTTGATTCTTCAAGAATATTAGGAGAAGGTGGCTTTGGTCTTGTATACAAGGGAATTCTAAATGATGGGAGGGATATAGCAGTGAAGATCCTCAAAAGAGATGATCAGCGTGGTGGCCGCGAGTTCTTGGCAGAAGTCGAGATGCTTAGCCGGCTGCACCATAGAAATTTAGTTACATTGTTAGGTATATGCATAGAAAGAAAGACTAGGTGCCTAGTCTATGAACTAGTCCCTAATGGAAGTGTGGAATCTCACCTACATGGCGCTGACAAGGAAACTAGTCCACTAGATTGGAATTCTCGAATGAAGATTGCACTTGGTGCAGCTAGGGGACTGGCTTATCTCCATGAGGATTCAAATCCATGTGTCATACACAGGGATTTCAAGTCCAGCAACATCTTGTTAGAAGATGATTTTACACCTAAAGTTTCAGATTTCGGATTGGCTAGAACGGCATTGGACGAGGGAAACAAGCATATCTCCACACATGTTATGGGAACATTTGGATACTTGGCTCCTGAATATGCAATGACTGGCCATCTTCTTGTAAAGAGTGATGTTTACAGCTATGGAGTAGTACTACTTGAGCTCCTAACTGGAAGAAAGCCTGTGGATTTCTCGCAACCACCGGGCCAAGAAAACCTTGTCAATTGGGCTCGTCCGCTTCTTACAAGCAAGCAGGGCTTAGAGATGATCATAGACCCTGTTGTAAAGCCTAGCATTCCTGCTGACACAATGTTAAAAGTCTCAGCAATTGCATCCATGTGTGTGCAACCAGAAGTGTCTCAAAGACCATTCATGGGGGAAGTTGTTCAAGCATTGAAGCTAGTAGCATTATCAGCAACAGATTTGCTCAGCACTTCAGGCCAAGAATTTGAATCTTTCAGGAGGCATTCTTCTTCAGGGCCTTTGACTAGTGGAAGGAAGAAAAAGTTCTGGCAGAAGTTGAGAAGCATGTCCAGAGGAAGCACCAGTGAGCATGGATTTTCAACTAAACTATGGCCTGGATCCCATTGA 2412 0.4353 MGLKLILLLLINLHLVLSTQQLHEYEATNPHHSRARNQFSIAIPPSKSTSGVSESTAHSPSESSSSVPVSIAMPPSKPIQRTHARKWTHSSVDSPVSHHKHHHSGKRSGNRIPAAAPAYPIHPPTYSYQGPSSVSKLQPPFSSPNNHDFRAPAPSPVAMSSHLNVPSPSPRISPLSSSFKKAKAQPPAAYSFVLPPPPPNKDCLSMTCSDPLTYTPPGSPCGCVLPLQVKLQIGIAISKFFPLVTKLAEEVAVGLSLNRSQVRIVGADAANLQLEKTNVLINLVPTGVKFNDTIAFSIYQKFWHKKVLRHASLFGAYEVLYVQYPGLPPSPPSASGDIDNGPYTGGDSNGTIMKPLGVDVSGKTKGESNNGRMIVVIVLSSVTAFVIFIGLAWLALLKYRSCVIKPEQGPDVLVSPSSKQSGTPTELAHGKMQSSGSLSFNSGSITYTGAAKIFSLNELEKATNNFDSSRILGEGGFGLVYKGILNDGRDIAVKILKRDDQRGGREFLAEVEMLSRLHHRNLVTLLGICIERKTRCLVYELVPNGSVESHLHGADKETSPLDWNSRMKIALGAARGLAYLHEDSNPCVIHRDFKSSNILLEDDFTPKVSDFGLARTALDEGNKHISTHVMGTFGYLAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDFSQPPGQENLVNWARPLLTSKQGLEMIIDPVVKPSIPADTMLKVSAIASMCVQPEVSQRPFMGEVVQALKLVALSATDLLSTSGQEFESFRRHSSSGPLTSGRKKKFWQKLRSMSRGSTSEHGFSTKLWPGSH 803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30484g00002 803 FunFam Receptor-like serine/threonine-protein kinase ALE2 542 756 - -
Stsc30484g00002 803 Gene3D Phosphorylase Kinase; domain 1 440 541 - -
Stsc30484g00002 803 ProSiteProfiles Protein kinase domain profile. 466 742 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30484g00002 803 FunFam receptor-like serine/threonine-protein kinase ALE2 439 541 - -
Stsc30484g00002 803 Gene3D Transferase(Phosphotransferase) domain 1 542 758 - -
Stsc30484g00002 803 MobiDBLite consensus disorder prediction 782 797 - -
Stsc30484g00002 803 MobiDBLite consensus disorder prediction 126 141 - -
Stsc30484g00002 803 CDD STKc_IRAK 472 740 - -
Stsc30484g00002 803 PANTHER OS01G0750732 PROTEIN 195 754 - -
Stsc30484g00002 803 ProSitePatterns Protein kinases ATP-binding region signature. 472 494 IPR017441 GO:0005524
Stsc30484g00002 803 MobiDBLite consensus disorder prediction 43 141 - -
Stsc30484g00002 803 MobiDBLite consensus disorder prediction 411 434 - -
Stsc30484g00002 803 MobiDBLite consensus disorder prediction 782 803 - -
Stsc30484g00002 803 ProSitePatterns Serine/Threonine protein kinases active-site signature. 588 600 IPR008271 GO:0004672|GO:0006468
Stsc30484g00002 803 MobiDBLite consensus disorder prediction 413 434 - -
Stsc30484g00002 803 MobiDBLite consensus disorder prediction 43 71 - -
Stsc30484g00002 803 Pfam Protein tyrosine and serine/threonine kinase 469 739 IPR001245 GO:0004672|GO:0006468
Stsc30484g00002 803 SUPERFAMILY Protein kinase-like (PK-like) 445 739 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30484g00002 Stsc-Chr30484 10287 13994 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30484g00002 200 798 Receptor kinase-like Gene Family AT5G56890 56.344 0.0 711
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Stsc30484g00002 PK_Tyr_Ser-Thr 2.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30484g00002 - - gmx:100814040 1078.16