Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30482g00006 ATGGCCGGGGAACTATACACATGGGGTGATGGTACTCATAATGCTGGGCTTCTTGGTCATGGTACTGATGTTAGTCATTGGATACCAAAGAGGATTGCGGGTCCATTAGAGGGACTTCAAGTTGCTTTCGTCGCTTGTGGTCCATGGCACACAGCCTTGATAACTTCTACTGGGCAACTCTTTACATTTGGTGATGGAACATTTGGTGTCTTGGGCCATGGAGATAGGGAAAATGTTTCATACCCCAGAGAAGTAGACTCCTTATCAGGGTTGAGGACCATAGCTGTTGCATGTGGAGTGTGGCATACTGCAGCGGTTGTAGAGGTTATTGTGACACAATCCAGTGCGAGTATATCATCTGGCAAATTGTTTACTTGGGGTGATGGAGACAAAAATCGCCTCGGACATGGGGATAAAGAGGCACGACTTAAACCAACTTGTGTTTCTGCGCTTATTGACTACAATTTTCATAAAATTGCATGTGGGCACAGTTTGACAGTGGGACTGACAACGTCTGGACGTGTTTTTACAATGGGAAGCACTGTTTATGGTCAGCTTGGGAATCCCCAGTCTGATGGGAAGCTTCCATGCTTGGTCGAAGACAAGATTTCCGTGGAATCCATTGATGAAATTGCATGTGGTGCATATCATGTAGCTGTTTTAACATCAAAAAATGAAGTTTTTACTTGGGGGAAGGGTGCAAATGGGAGATTGGGTCATGGAGATGTTGAAGATCGAAAAGTACCGACTTTGGTTGAAGCATTGAAGGACAGACATGTGAAATATATTGCATGTGGTTCGAACTACTCTGCTGCCATATGCCTTCATAAGTGGGTATCTGGAGCCGAGCAGTCTCAATGCTCGGCTTGTAGACAGGCATTTGGGTTCACTAGGAAGAGGCACAATTGTTATAATTGTGGACTTGTACATTGCCATTCATGCAGCTCACGGAAAGCATTAAGGGCGGCCCTGGCTCCAAATCCTGGCAAGCCTTATCGTGTTTGTGATTCTTGTTTTGCAAAACTGAACAAGGTTGCAGAAGCTAGCAACAGTAATCGGAGAAATACCCTGCCTCGTCTGTCAGGTGAAAACAAAGACAGGTTGGAAAAATCAGACCTGAAATTATCGAAGGCACTGGTTCCTTCCAATATTGATTTGATAAAGCAGTTAGATAGTAAGGCAGCCAAACAAGGGAAGAAAGCAGATACGTTCTCGCTTGTTCGCACCTCACAAGCACCTTCATTGCTACAGTTGAAAGATGTCGTCTTGGCAACTGCTGTTGATCTGAAGCGTACAGCCCCTAGACCAGTGGTTGCACCTTCTGGAGTAAGTTCAAGGTCTGTGTCCCCTTTCTCTAGAAGACCAAGCCCCCCTCGTTCGGCTACCCCAATTCCAACAACATCAGGACTTTCCTTCTCCAAGAGCATTGCTGATAGTTTGAAGAAAACAAATGAACTTTTAAATCAGGAAGTGCAGAAGCTACGTTCTCAGGTTGAAAGCCTGAAACAGAGATGTGAACTGCAAGAATTAGAGCTTCAGCGGTCGACAAAAAAGACTCAAGATGCTATGGCAATGGCTGCTGAGGAATCTGCTAAATGTAAAGCTGCAAAAGAAGTTATAAAGTCACTTACAGCACAGCTCAAAGGTTTTGCTGAGAAGCTTCCACCTGGAGCTTATGATGCCGAGAACATCAAACCGGCTTACCTGCCAAACAGCATTGAGCCAAATGGTATCCATCTTCCGGATTCAAATGGTGAGCACCACTCGAGGGCGGAGTCAATCAGTGGCTCTAGTTTGGCCTCCACAGCATTCGAATCCTCTCTGCTCAATAGAGGGAACTTTCAAGGAACCTATGGATCTAATCTGGACCAGCTAAACCGAGCCAGTGTGACATCCAATGGTTCAGACAACTATCCAGATGCTAGATTGTCAAATGGTGGTGGAAGCATGTCAGATACTGTTGACGGTAGGGATTCGGGCAATTTCCACGATGACGAGAGTGGTTTAAGATCAAGGAATGCAGGACTCTCTGCTAATAGCAATCAGATTGAGGCAGAATGGATTGAACAGTATGAACCTGGTGTCTATATAACGCTCGTAGCCCTGCGCGACGGAACAAGAGACTTGAAGCGAGTGCGTTTCAGCCGAAGAAGATTCGGAGAGCATCAAGCAGAGACTTGGTGGTCGGAAAACCGGGACAAGGTATATGAACGGTACAATGTTCGTAGCGCAGACAAGTCTTCTAACCAAGCAGGGGCGCCGCATAGGACGGACGGTGCTAGTTCTCTTGTTACCCAAACATAG 2304 0.4601 MAGELYTWGDGTHNAGLLGHGTDVSHWIPKRIAGPLEGLQVAFVACGPWHTALITSTGQLFTFGDGTFGVLGHGDRENVSYPREVDSLSGLRTIAVACGVWHTAAVVEVIVTQSSASISSGKLFTWGDGDKNRLGHGDKEARLKPTCVSALIDYNFHKIACGHSLTVGLTTSGRVFTMGSTVYGQLGNPQSDGKLPCLVEDKISVESIDEIACGAYHVAVLTSKNEVFTWGKGANGRLGHGDVEDRKVPTLVEALKDRHVKYIACGSNYSAAICLHKWVSGAEQSQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPNPGKPYRVCDSCFAKLNKVAEASNSNRRNTLPRLSGENKDRLEKSDLKLSKALVPSNIDLIKQLDSKAAKQGKKADTFSLVRTSQAPSLLQLKDVVLATAVDLKRTAPRPVVAPSGVSSRSVSPFSRRPSPPRSATPIPTTSGLSFSKSIADSLKKTNELLNQEVQKLRSQVESLKQRCELQELELQRSTKKTQDAMAMAAEESAKCKAAKEVIKSLTAQLKGFAEKLPPGAYDAENIKPAYLPNSIEPNGIHLPDSNGEHHSRAESISGSSLASTAFESSLLNRGNFQGTYGSNLDQLNRASVTSNGSDNYPDARLSNGGGSMSDTVDGRDSGNFHDDESGLRSRNAGLSANSNQIEAEWIEQYEPGVYITLVALRDGTRDLKRVRFSRRRFGEHQAETWWSENRDKVYERYNVRSADKSSNQAGAPHRTDGASSLVTQT 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30482g00006 767 FunFam Putative E3 ubiquitin-protein ligase HERC1 283 351 - -
Stsc30482g00006 767 ProSiteProfiles BRX domain profile. 685 740 IPR013591 -
Stsc30482g00006 767 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 173 224 IPR000408 -
Stsc30482g00006 767 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 281 343 IPR017455 -
Stsc30482g00006 767 CDD FYVE_like_SF 286 339 - -
Stsc30482g00006 767 MobiDBLite consensus disorder prediction 627 675 - -
Stsc30482g00006 767 MobiDBLite consensus disorder prediction 575 596 - -
Stsc30482g00006 767 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 3 57 IPR000408 -
Stsc30482g00006 767 MobiDBLite consensus disorder prediction 743 767 - -
Stsc30482g00006 767 MobiDBLite consensus disorder prediction 627 656 - -
Stsc30482g00006 767 Pfam FYVE zinc finger 277 343 IPR000306 GO:0046872
Stsc30482g00006 767 Coils Coil 526 546 - -
Stsc30482g00006 767 MobiDBLite consensus disorder prediction 436 469 - -
Stsc30482g00006 767 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 3 549 - -
Stsc30482g00006 767 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 44 54 IPR000408 -
Stsc30482g00006 767 Pfam Transcription factor BRX N-terminal domain 528 563 IPR027988 -
Stsc30482g00006 767 Gene3D - 1 113 IPR009091 -
Stsc30482g00006 767 Coils Coil 477 518 - -
Stsc30482g00006 767 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 58 109 IPR000408 -
Stsc30482g00006 767 FunFam PH, RCC1 and FYVE domains-containing protein 1 110 282 - -
Stsc30482g00006 767 PRINTS Chromosome condensation regulator RCC1 signature 3 19 IPR000408 -
Stsc30482g00006 767 PRINTS Chromosome condensation regulator RCC1 signature 60 74 IPR000408 -
Stsc30482g00006 767 PRINTS Chromosome condensation regulator RCC1 signature 44 60 IPR000408 -
Stsc30482g00006 767 PRINTS Chromosome condensation regulator RCC1 signature 162 180 IPR000408 -
Stsc30482g00006 767 PRINTS Chromosome condensation regulator RCC1 signature 220 241 IPR000408 -
Stsc30482g00006 767 SUPERFAMILY FYVE/PHD zinc finger 277 354 IPR011011 -
Stsc30482g00006 767 SMART fyve_4 275 344 IPR000306 GO:0046872
Stsc30482g00006 767 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 96 106 IPR000408 -
Stsc30482g00006 767 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 276 356 IPR013083 -
Stsc30482g00006 767 Pfam Transcription factor regulating root and shoot growth via Pin3 684 739 IPR013591 -
Stsc30482g00006 767 Gene3D - 114 275 IPR009091 -
Stsc30482g00006 767 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 225 276 IPR000408 -
Stsc30482g00006 767 SUPERFAMILY RCC1/BLIP-II 3 278 IPR009091 -
Stsc30482g00006 767 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 121 172 IPR000408 -
Stsc30482g00006 767 Pfam Regulator of chromosome condensation (RCC1) repeat 3 54 IPR000408 -
Stsc30482g00006 767 Pfam Regulator of chromosome condensation (RCC1) repeat 226 273 IPR000408 -
Stsc30482g00006 767 Pfam Regulator of chromosome condensation (RCC1) repeat 120 167 IPR000408 -
Stsc30482g00006 767 Pfam Regulator of chromosome condensation (RCC1) repeat 172 221 IPR000408 -
Stsc30482g00006 767 Pfam Regulator of chromosome condensation (RCC1) repeat 58 106 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30482g00006 Stsc-Chr30482 37167 41916 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30482g00006 686 761 Major Intrinsic Protein MIP AT1G31880 48.684 1.30e-15 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30482g00006 - - adu:107490830 1451.42