Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30480g00005 ATGGCTCGTTTGAATCCTGAGTTGGAGCTTGCTGGTAGAGGAGAGCATCATGTTATGGAAGGGATTGGTGATGATAATGTTGTTATCAACAACAACATGGGTGATGATGCTTCTATGATGCATTTCCCTGCTAACTGGCCAATGCCGGCCTCTGGATTGAATGCATCAACTTCAACTCAATTTACCGTCTTATTCAATGGAAACACTTTTGTCTATGATGGAATTTCTACAGAGAAGGTGCAAGAGATACTGCTTATTGCTGCTGCGTATGCCAAGTCTGCTGAAGTGAAAGTTGGGACACAATCTTCTTTCACTCCACTCATTCCCACTAACACAAGCCCGTCTCCTGCTCAAAAAAACTCCACTAATAACAACTTGCCTTCAAAACAATCTCCATGCTTACCTGCAGAAAAGCATTCCATTTGCAGGCTTCAAGAATTTCCATTAGCACGTAGACAATCTCTTCAGAGGTTTCTTGAGAAGCGACGAGTCAGGTTGTTTAGCAAAGCCCCTTATGGTTTCTCAAAAGACATGGCTGGGGAGCTGATAGAGAACAACTTCTATGATGAGAATAGTCAAGGCAACATAGAGAACTTTTATGATGACAACAATAGTCCACAAGATTTTGCTTCTTAA 636 0.4182 MARLNPELELAGRGEHHVMEGIGDDNVVINNNMGDDASMMHFPANWPMPASGLNASTSTQFTVLFNGNTFVYDGISTEKVQEILLIAAAYAKSAEVKVGTQSSFTPLIPTNTSPSPAQKNSTNNNLPSKQSPCLPAEKHSICRLQEFPLARRQSLQRFLEKRRVRLFSKAPYGFSKDMAGELIENNFYDENSQGNIENFYDDNNSPQDFAS 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30480g00005 211 MobiDBLite consensus disorder prediction 107 132 - -
Stsc30480g00005 211 Pfam Jas motif 148 172 IPR018467 -
Stsc30480g00005 211 MobiDBLite consensus disorder prediction 107 131 - -
Stsc30480g00005 211 ProSiteProfiles Tify domain profile. 54 89 IPR010399 -
Stsc30480g00005 211 Pfam tify domain 56 88 IPR010399 -
Stsc30480g00005 211 SMART tify_2 54 89 IPR010399 -
Stsc30480g00005 211 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 47 173 IPR040390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30480g00005 Stsc-Chr30480 14950 17253 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30480g00005 60 172 Tify Gene Family AT5G20900 43.860 1.81e-19 80.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Stsc30480g00005 tify 2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30480g00005 K13464 - gmx:100306655 127.102