Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30478g00006 ATGGGTAGCATCCAACTCCAACTACCTGAAGCTGAGCAACAACACAGAGACACAGACACAGACACAGACACAGTCTATGTTGCGGTGGGAAACAACATTCGCAAGACCCAACAACTATTGCATTGGGCTTCGCACAATTTCCCTTCCAAATCAATTTGCCTCCTTCACGTTCACCATCCTCACCCCCATAGAAACCCTTCTAGGGATGAAACACAATATCATTCATTCTCGGATCATGAAAGTAAAAAAATGCATGAACTCTTGGACCAATATGTTGCCAATCTTGTACAAACAGGGGTAAGGGTGTATAAATTGTTGATTGAGATGGACAATACTGAGAAAGGGATTATGGAAGCTATTGCTCAGCACAATATTAGATTGCTTGTAATTGGAGCTGCAGCAGAGACATATAACTTAGGTAAACCGGCTGAGCAAGAGTCAGCAAAGAGTATTCCTTCACTTAAACAAGCATTTCCATCATGTAATATTTGGTTCATTTGCGATGGCATCATAAAATGTACCAGGGTAGATAGTAAACTTACACCAGAAATAGAGACTGCCCCTCCACTGTTGGTGCTCAATTCACATGCAGAAGCCGAACAATCACAGAAGTTTGAATCTGAATCAATTCCTGATGGACTGGAACATTTAGATTCTGACGATGTGGAAGAAATTGAAACTTTCAGTTCCCACGGTTCATTATGTTCAAAATGGTCCTCCATTAGTGTGACTGACAGTTCAAACTTGACAGGTTTGCTGTTTCATGAGGAGGAGGTAGATGATGAAATTGAAGACAACAGCAAAATAAATGGTAGACTGGAAGAGTCCACCAGAGATACTAAAAGCATGAGGCGAAAAGAATTTGAACAGGCTTTAAAGCAGTGGAAAGTCAAAGAAAGAACTTTGGAGAAGGGTGAAGTATTAGAAATAGAAAGCCTGTGCACTAAGGAGAAAAACAAAAGAAGAGAAGTTGAAGAACAATTGGCTAGAGAGAAGGAAGAATTACAAAAAACAAAGAATCAGCAAGATGAAATAATGCATGGGTTGCTAGCTGTCCAAGAACAAAATTCAGCACTTGAGAACCAACTTTCTGAGACACAGAATACAGCAAAAGAGTTGGAGGAGAAGATTTTATCAGCTGTGGACCTCTTGATAAGTTTCAAGGAAAAACGAGATAGGCTGCAGATAGAGTGTGCAAATGCAGCAAAGCAAGTCCAAGTGCTGAGGGAATTCGGAAAATCACATACGGCATTTTCATATGCTGTAGAGTTCCCTGTATTTTCTTTCATGGAGATCAATGAGGCAACTAATGATTTTGATCCATCTTGGAAGATTGGAGAAGGAAGGTATGGAAGTGTTTACAAAGGAGTGCTTCGCAATATGCATGTTGCTATAAAAATGTTACCTTCTTATGGCTGTCAGAGCCAATTGGAGTTTGAACGTCAGGTAGCAGTTTTGAGTCAGGTGAGACATCGAAACCTGTTGACACTGATTGGAACCTGTGCCGAGTCTAGGTCACTTGTATATGAATATCTAAACAATGGCAGCCTTGAAGGTCACCTTGCCCGCAAAGAAAAGTCTCCACTCCCGTGGCAAATTCGAATATCCATTGCTGCTGACATATGCTCTGCTCTAATTTTTCTTCACTCTAGCGAGCCTAGTATTATACATGGGAATTTGAAAGCTAGTAAGGTTCTCCTTGATGCTAACTTTGTTGCCAAACTGGCTGACATTGGCATTCGTGGTTTAGTCGAAAAGAATGTGGATTCAGCTGACACAACCAGAACACACAGCCACTCAAATGAAAGTTTGGCATATGTTGATCCAGAGTATGTTGCCACTGACAAATTCACTCCAGAATCAGATGTGTATTCATTTGGAATCTTGTTGTTGCAACTTTTAACTGGAAGACCACTTCTGGGGCTAGTCAAAGATGTCAAATGTGCACTGGAAAAAGATAACCTTGAAGCAGTATTGGACTTCTCAGCTGGTGAGTGGCCACTTGATCAAACTATACATCTGGCATATTTAGCATTGAGATGTTGTGACAAGAGTTGGCTGAATCGGCCGGACCTCACATCAGATATTTGGGGTGTTCTTGAACCATTCAAAACTATGTGCATGAACATGCCACCATATTTGACGTCCAAGAAGCATCGTCGCACTCCGTCCCACTTTGTATGCCCCATTGTGCAGGAGGTAATGGAAGATCCATACATAGCTGCAGATGGCTTTACATATGAAGCCGAGGCAATAAGAGAATGGTTGGATAGTGGTCATGACACTTCCCCAATGACAAACCTCAAGCTTGAGCACACAAATTTAGTGCCTAATTATGCATTACACAATGCAATTCAAGAGTGGCAGCAACTACAGTGA 2379 0.414 MGSIQLQLPEAEQQHRDTDTDTDTVYVAVGNNIRKTQQLLHWASHNFPSKSICLLHVHHPHPHRNPSRDETQYHSFSDHESKKMHELLDQYVANLVQTGVRVYKLLIEMDNTEKGIMEAIAQHNIRLLVIGAAAETYNLGKPAEQESAKSIPSLKQAFPSCNIWFICDGIIKCTRVDSKLTPEIETAPPLLVLNSHAEAEQSQKFESESIPDGLEHLDSDDVEEIETFSSHGSLCSKWSSISVTDSSNLTGLLFHEEEVDDEIEDNSKINGRLEESTRDTKSMRRKEFEQALKQWKVKERTLEKGEVLEIESLCTKEKNKRREVEEQLAREKEELQKTKNQQDEIMHGLLAVQEQNSALENQLSETQNTAKELEEKILSAVDLLISFKEKRDRLQIECANAAKQVQVLREFGKSHTAFSYAVEFPVFSFMEINEATNDFDPSWKIGEGRYGSVYKGVLRNMHVAIKMLPSYGCQSQLEFERQVAVLSQVRHRNLLTLIGTCAESRSLVYEYLNNGSLEGHLARKEKSPLPWQIRISIAADICSALIFLHSSEPSIIHGNLKASKVLLDANFVAKLADIGIRGLVEKNVDSADTTRTHSHSNESLAYVDPEYVATDKFTPESDVYSFGILLLQLLTGRPLLGLVKDVKCALEKDNLEAVLDFSAGEWPLDQTIHLAYLALRCCDKSWLNRPDLTSDIWGVLEPFKTMCMNMPPYLTSKKHRRTPSHFVCPIVQEVMEDPYIAADGFTYEAEAIREWLDSGHDTSPMTNLKLEHTNLVPNYALHNAIQEWQQLQ 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30478g00006 792 Gene3D Transferase(Phosphotransferase) domain 1 512 705 - -
Stsc30478g00006 792 Gene3D Phosphorylase Kinase; domain 1 412 511 - -
Stsc30478g00006 792 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 27 133 - -
Stsc30478g00006 792 ProSiteProfiles Protein kinase domain profile. 439 704 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30478g00006 792 Coils Coil 314 345 - -
Stsc30478g00006 792 SMART Ubox_2 725 788 IPR003613 GO:0004842|GO:0016567
Stsc30478g00006 792 ProSiteProfiles U-box domain profile. 721 792 IPR003613 GO:0004842|GO:0016567
Stsc30478g00006 792 ProSitePatterns Protein kinases ATP-binding region signature. 445 466 IPR017441 GO:0005524
Stsc30478g00006 792 Coils Coil 349 404 - -
Stsc30478g00006 792 MobiDBLite consensus disorder prediction 58 78 - -
Stsc30478g00006 792 CDD RING-Ubox_WDSUB1-like 723 778 - -
Stsc30478g00006 792 MobiDBLite consensus disorder prediction 63 78 - -
Stsc30478g00006 792 Pfam U-box domain 723 789 IPR003613 GO:0004842|GO:0016567
Stsc30478g00006 792 PANTHER OS02G0152300 PROTEIN 25 787 - -
Stsc30478g00006 792 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 721 792 IPR013083 -
Stsc30478g00006 792 MobiDBLite consensus disorder prediction 1 21 - -
Stsc30478g00006 792 Pfam Protein tyrosine and serine/threonine kinase 444 691 IPR001245 GO:0004672|GO:0006468
Stsc30478g00006 792 SUPERFAMILY RING/U-box 720 789 - -
Stsc30478g00006 792 Gene3D HUPs 24 140 IPR014729 -
Stsc30478g00006 792 SUPERFAMILY Protein kinase-like (PK-like) 416 693 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30478g00006 Stsc-Chr30478 30790 36093 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30478g00006 80 789 U-box Gene Family AT3G49060 44.265 0.0 560
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Stsc30478g00006 PK_Tyr_Ser-Thr 1.7e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30478g00006 - - aprc:113871315 993.801