Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30478g00003 ATGACACAAGCGCTTCGATACTTCAAAGAGTTGACAGAACAGAATGTTCTCGCACAGGTTTGGGCGCCTGTGAGAAATGGTAATAGATTTGTGCTTACAACTTCAGGTCAACCATTTGTTCTTGATCCACATAGTAATGGACTCCACCAGTACAGAACAGTGTCCCTGATGTATGTGTTTTCGGTGGATGGAGAAAATGATGGAACTCTTGGGCTTCCTGGTCGAGTTTATAAGCAAAAAGTACCAGAATGGTCACCAGATGTTCAGTATTATTCTAGTAAGGAGTATCCTCGCAGAGATCATGCACAACATTATAATGTCCGCGGTACCTTGGCTTTGCCTGTCTTTGAACCTTCAATGCAGTCTTGTGTAGGTGTGTTGGAGTTGATAATGACTTCACAGAAGATTAACTATGCTCCTGAAGTTGATAAAATTTGCAAAGCCCTCGAGGCAGTGAATTTGAAGAGTTCAGAAATTTTAGACCATCAATACACTCAGATTTGTAATGAAGGCCGCCAGAATGCGCTAGCAGAGATCTTGGAGATATTGACAGTGGTTTGTGAAACTCACAACTTACCTTTGGCACAAACATGGGTTCCATGTAGGCATCGGAGTGTTCTGGCCCATGGAGGTGGCCTAAAGAAAAGCTGTTCAAGTTTTGATGGTAGTTGCATGGGGAAAGTTTGCATGTCTACAACTGATATTGCATTCTATATCATAGATGCTCATTTATGGGGTTTCCGCGAGGCCTGTGTTGAACATCACTTACAGCAAGGTCAAGGGGTTGCTGGCAGGGCTTTTTCTTCACATAGCATGAGCTTCTGTGGGAACATTACCCAATTCTGCAAAATTGATTACCCTTTAGTTCATTATGCTCTCATGTTTGGGTTAACTAGCTCCTTTTCAATCTGTTTGAGAAGCTCACATACCGGAGATGATGACTATGTATTAGAGTTTTTTCTGCCACCTAGGATCACAGACTTTAACGAACAGAAGACTTTGTTGGGATCCATATTGGCAATAATGAAACAACATTTCCAGAGTCTTAAGATCGCTTCTGGTGTTGAACTTGAGCAGCATAGTTCAATTGAAATTATTGAAGCAACAACTGAAGGAGATCCCTCATTGCAGAAAATAATAATGTGTCGCAATGATGGAGGGAGTATTGGTGATCAGATACCCTCCTTAGAAACTAAAAATCCAAAGAAGCCATCAGAGAGGAAACGTGGTAAAACTGAAAAATCAATAAGTCTTGAAGTTCTGCAACGTTATTTTGCTGGGAGTCTTAAGGATGCTGCAAAGAGCCTTGGTGTTTGCCCTACTACAATGAAGCGCATCTGCAGGCAGCATGGGATATCCCGTTGGCCATCTCGAAAGATCAACAAGGTTAACCGTTCCCTGTCCAAGCTCAAGCGTGTTATTGAATCAGTCCAAGGCGCCGAAGGAGCATTCGCTTTGAATCCTCTAAGCACAAGTCCTCTTCCCTTTCCTGAGCCTTCTACTCCAAACAAGTTCAGCCAGCAAGCCTCACCAACTGAACCTCAGATTAGAGAAAATGAACTAGATGACTCTAAAGTTTTAGAAACAACCAGACTTGCCAGAGCACAGTGCCGCGAGAAAATAGTTAATGGTAAAAGCAGTTCTATTCGGGAGGTAGGGAAGGAAACAAAGAGGACTAGAGCAAGGAGTTGCTCTAGTGCAGATAGCACAAATCCTACTTCTCATGGTTCATGCCATGGTAGCCCCCCTATTGAAAGTTCACCCGTAAAAGATATATTCATTACATCAAACAATGATCAATGTGTTGGTATAAGGTCACCAGAATCGACAGTGCAACCGCTGAATAATACACTGAACTATCCAACGTCTTGCCATTTGCCTGATATGGTGGCAACAGAACTTCAAGAGCCATTTGGTGGAATGCTAATAGAAGATGCCGGGAGTTCTAAAGACTTGAGAAACCTATGTCCTTCTGTAGCCGAGGCAATTCTGGAGGACACGGCCCCGGAACCTTGCCGGACTAATCCTCCATTTTCGGGATTGGCTCCCAAGCAATGCATGAATCCCCTTAAGGAGACGGTGACACCCTTTGCACCTAGGAAAGAAATGAAGACTGTTACTATTAAGGCAACATATAGAGAAGATATCATAAGGTTTAGGGTTTCTTTAAATTGTAGCATTGTGGAACTGAAAGAAGAAGTTGCCAAAAGGTTGAAACTAGAAGTAGGTACTTTTGATATCAAGTACCTTGATGATGACCATGAATGGGTTTTGATAGCATGTGATGCAGATCTACAAGAGTGTATAGATGTTTCAAGATCATCAGCAAGTAACATAATAAGGGTTTTGGTGCATGAAATAACTTCCAATCTCGGAAGCTCATGTGAGAGCTCAGGGGAGTAA 2403 0.4249 MTQALRYFKELTEQNVLAQVWAPVRNGNRFVLTTSGQPFVLDPHSNGLHQYRTVSLMYVFSVDGENDGTLGLPGRVYKQKVPEWSPDVQYYSSKEYPRRDHAQHYNVRGTLALPVFEPSMQSCVGVLELIMTSQKINYAPEVDKICKALEAVNLKSSEILDHQYTQICNEGRQNALAEILEILTVVCETHNLPLAQTWVPCRHRSVLAHGGGLKKSCSSFDGSCMGKVCMSTTDIAFYIIDAHLWGFREACVEHHLQQGQGVAGRAFSSHSMSFCGNITQFCKIDYPLVHYALMFGLTSSFSICLRSSHTGDDDYVLEFFLPPRITDFNEQKTLLGSILAIMKQHFQSLKIASGVELEQHSSIEIIEATTEGDPSLQKIIMCRNDGGSIGDQIPSLETKNPKKPSERKRGKTEKSISLEVLQRYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGAEGAFALNPLSTSPLPFPEPSTPNKFSQQASPTEPQIRENELDDSKVLETTRLARAQCREKIVNGKSSSIREVGKETKRTRARSCSSADSTNPTSHGSCHGSPPIESSPVKDIFITSNNDQCVGIRSPESTVQPLNNTLNYPTSCHLPDMVATELQEPFGGMLIEDAGSSKDLRNLCPSVAEAILEDTAPEPCRTNPPFSGLAPKQCMNPLKETVTPFAPRKEMKTVTIKATYREDIIRFRVSLNCSIVELKEEVAKRLKLEVGTFDIKYLDDDHEWVLIACDADLQECIDVSRSSASNIIRVLVHEITSNLGSSCESSGE 800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30478g00003 800 CDD PB1_NLP 706 786 IPR034891 -
Stsc30478g00003 800 ProSiteProfiles RWP-RK domain profile. 402 483 IPR003035 -
Stsc30478g00003 800 Gene3D - 702 786 - -
Stsc30478g00003 800 FunFam RWP-RK domain-containing protein 702 786 - -
Stsc30478g00003 800 Pfam PB1 domain 705 786 IPR000270 GO:0005515
Stsc30478g00003 800 MobiDBLite consensus disorder prediction 563 581 - -
Stsc30478g00003 800 MobiDBLite consensus disorder prediction 545 590 - -
Stsc30478g00003 800 MobiDBLite consensus disorder prediction 488 520 - -
Stsc30478g00003 800 Pfam RWP-RK domain 415 463 IPR003035 -
Stsc30478g00003 800 PANTHER PROTEIN NLP8 1 799 IPR045012 GO:0003700
Stsc30478g00003 800 MobiDBLite consensus disorder prediction 501 515 - -
Stsc30478g00003 800 ProSiteProfiles PB1 domain profile. 705 787 IPR000270 GO:0005515
Stsc30478g00003 800 SUPERFAMILY CAD & PB1 domains 703 790 - -
Stsc30478g00003 800 SMART PB1_new 705 787 IPR000270 GO:0005515
Stsc30478g00003 800 MobiDBLite consensus disorder prediction 388 413 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30478g00003 Stsc-Chr30478 18890 21967 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30478g00003 131 800 NLP Transcription Factor Family AT4G24020 53.931 0.0 675
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Stsc30478g00003 PB1 2.1e-19 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30478g00003 - - aip:107618129 1505.35