Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30478g00001 ATGAAGGTGTTACTGGCTCTGGCGGCGTTGTTATGTGTGGTGAGAGTAGTGGCGGCGGGTCCAGGGCGTGTTGCCTCCAAAGATAATAATAATAATGAAGAAGAAGAAGAGAGGAGGCTGCTGGTGAGCATGACTCTCGTTAAGAACGCTCCTGCCAGCGGTGCTCTTTGTTTGGATGGGAGTTTACCGGCTTATCACTTGCATAGGGGATTTGGAGCTGGAATCAATAACTGGCTTCTCCAATTCGAGGGAGGTGGGTGGTGCAATGACTTGCCATCGTGCTTGGAGAGAGCACAATCTCGCAGGGGCTCAACACGTTACATGTCCAAAATGGAAGTCTTCTCTGGTATTTTAAGCAACAATGCCTCCCAAAATCCAG 379 0.496 MKVLLALAALLCVVRVVAAGPGRVASKDNNNNEEEEERRLLVSMTLVKNAPASGALCLDGSLPAYHLHRGFGAGINNWLLQFEGGGWCNDLPSCLERAQSRRGSTRYMSKMEVFSGILSNNASQNP 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30478g00001 126 PANTHER NOTUM-RELATED 7 126 IPR004963 GO:0016787
Stsc30478g00001 126 Pfam Pectinacetylesterase 37 126 IPR004963 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30478g00001 Stsc-Chr30478 919 3346 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30478g00001 4 126 Carbohydrate Esterase AT5G23870 64.228 4.80e-47 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30478g00001 K19882 - mnt:21389932 169.088