Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30477g00007 ATGCTGCTGAGGCCTGGAGGCAAGGTCTTTTCACGAGCCGAGCCGAGACACAAGCAAGAAATTGTGAGGTTGCTGAAGGACATGGGGGAGATAGTTGCAATGACCGGAGATGGAGTGAACGATGCACCTGCCCTCAAGCTTGCTGATATTGGCATTGCCATGGGAATAACTGGGACAGAGGTTGCAAAAGAAGCTTCAGATATGGTGCTAGCAGATGACAATTTTAGCACAATTGTCTCGGCCGTTGCAGAAGGCCGCGCAATTTACAATAACATGAAATCATTCATCAGGTACATGATATCATCAAATGTTGGAGAAGTTATTTCAATTTTCTTGACAGCTGCTCTGGGGATCCCAGAATGCATGATACCAGTGCAGCTTTTATGGGTAAACTTGGTCACAGATGGTCCACCTGCAACAGCTCTTGGTTTCAACCCTGCTGATGTTGATATCATGCGGAAGCCGCCTCGGAAAAGCGATGATTCTCTCATAAGTTCTTGGGTCCTTGTCCGGTATCTTGTTATTGGCTCTTATGTGGGAATTGCTACAGTTGGAATTTTTGTCTTGTGGTACACGCAACCTTCTTTTCTAGGCATAAATCTTCTTGGGGACGGCCACACAATCGTAGAACTCTCCCAGCTTCTCAACTGGGGAGAGTGCCATTCTTGGCCTAACTTCACGGCCGCGCCATTCACAGTCAGTGGCGGCCGAATGATAACATTTTCAAATCCATGTGACTACTTCTCTGTTGGCAAAGTGAAGGCTATGACTCTGTCCCTCTCTGTATTGGTAGCAATTGAGATGTTCAATTCCCTAAATGCCCTCTCAGAAGAGAATAGCTTGAGAAAGATTCCACCTTGGAGGAACCCTTGGCTTATGGTAGCAATGTCAATATCATTTGGACTCCATTGCCTCATACTCTATACTCCATTCCTGGCTAATGTGTTTGGTGTTGTTCCACTTAGCTTGAGTGAGTGGTTTGTGGTGATTCTAATATCAGCACCTGTTATTCTCATTGATGAGATTCTTAAATGGGTGGCTAGGAATCAAAGGAAGATGAAAAAGGAGAAAGTAGCATGA 1080 0.4528 MLLRPGGKVFSRAEPRHKQEIVRLLKDMGEIVAMTGDGVNDAPALKLADIGIAMGITGTEVAKEASDMVLADDNFSTIVSAVAEGRAIYNNMKSFIRYMISSNVGEVISIFLTAALGIPECMIPVQLLWVNLVTDGPPATALGFNPADVDIMRKPPRKSDDSLISSWVLVRYLVIGSYVGIATVGIFVLWYTQPSFLGINLLGDGHTIVELSQLLNWGECHSWPNFTAAPFTVSGGRMITFSNPCDYFSVGKVKAMTLSLSVLVAIEMFNSLNALSEENSLRKIPPWRNPWLMVAMSISFGLHCLILYTPFLANVFGVVPLSLSEWFVVILISAPVILIDEILKWVARNQRKMKKEKVA 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30477g00007 359 SUPERFAMILY Calcium ATPase, transmembrane domain M 85 350 IPR023298 -
Stsc30477g00007 359 Gene3D - 8 80 IPR023214 -
Stsc30477g00007 359 PANTHER CALCIUM-TRANSPORTING ATPASE 8 355 - -
Stsc30477g00007 359 Pfam haloacid dehalogenase-like hydrolase 10 49 - -
Stsc30477g00007 359 PRINTS P-type cation-transporting ATPase superfamily signature 59 71 - -
Stsc30477g00007 359 PRINTS P-type cation-transporting ATPase superfamily signature 35 54 - -
Stsc30477g00007 359 Pfam Cation transporting ATPase, C-terminus 120 346 IPR006068 -
Stsc30477g00007 359 SUPERFAMILY HAD-like 7 93 IPR036412 -
Stsc30477g00007 359 FunFam ECA1 (ER-TYPE CA2+-ATPASE 1) 99 354 - -
Stsc30477g00007 359 NCBIfam HAD-IC family P-type ATPase 9 120 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc30477g00007 359 PRINTS H+-transporting ATPase (proton pump) signature 35 51 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc30477g00007 359 PRINTS H+-transporting ATPase (proton pump) signature 67 92 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc30477g00007 359 PRINTS H+-transporting ATPase (proton pump) signature 7 23 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc30477g00007 359 Gene3D - 81 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30477g00007 Stsc-Chr30477 58791 60217 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30477g00007 1 358 Primary Pumps ATPases(2) AT4G00900 81.994 0.0 617
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30477g00007 K01537 - gmx:100792952 646.736