Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30477g00006 ATGAGGCCGGTTTTTGCTGGAAATCTGGAGTATGATACACGACAATCGGAGCTGGAGCGATTGTTCTCAAAGTATGGAAGGATTGACCGCGTTGACATGAAATCTGGTTTTGCTTTTGTCTATTATGAGGATGAGCGTGATGCTGAAGAAGCAATTCGTGCACTTGACAATTTTCCGTTTGGTTATGAAAAGCGAAGGCTCTCTGTTGAATGGGCTAGGGGCGAACGCGGGCGTCATCGTGATGGCTCAAGGGCAAACCAGAAGCCAACAAAAACCCTGTTTGTGATCAACTTTGACCCAATTCGTACTAGAGTTCGTGATATAGAGAAGCACTTTGAACCTTATGGGAAGGTTCTTCATGTCCGAATTCGTAGGAACTTTGCGTTTGTGCAGTTTGAAACACAAGAAGATGCCACGAAAGCTCTTGAGTGTACAAATATGAGTAAGATACTGGACAGGGTGGTGTCTGTGGAGTATGCACTGAGGGATGATGGTGAGAGGGGCGAAAATTATGACAGTCCGAGACGTGGCGGTTATGACAGATCACCTAGTCCAGCCTATCGCAGGCGGCCGAGTCCTGACTATGGTCATCCACGCAGCCCTGTGTATGATAGATATAATGGACCAGACAGGCGTAGGAGTCCCGATTACGGCAGGCACAGGAGCCCAGATTACGCCAGGCACAGGAGCCCTGATTATGGCAGATACCGCAGCCGTTCGCCAGTTCGAAGGTCAAGGACTTAA 744 0.4866 MRPVFAGNLEYDTRQSELERLFSKYGRIDRVDMKSGFAFVYYEDERDAEEAIRALDNFPFGYEKRRLSVEWARGERGRHRDGSRANQKPTKTLFVINFDPIRTRVRDIEKHFEPYGKVLHVRIRRNFAFVQFETQEDATKALECTNMSKILDRVVSVEYALRDDGERGENYDSPRRGGYDRSPSPAYRRRPSPDYGHPRSPVYDRYNGPDRRRSPDYGRHRSPDYARHRSPDYGRYRSRSPVRRSRT 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30477g00006 247 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
Stsc30477g00006 247 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 93 155 IPR000504 GO:0003723
Stsc30477g00006 247 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 60 IPR000504 GO:0003723
Stsc30477g00006 247 MobiDBLite consensus disorder prediction 204 239 - -
Stsc30477g00006 247 FunFam Serine/arginine-rich splicing factor RS31 1 84 - -
Stsc30477g00006 247 CDD RRM2_AtRSp31_like 92 161 - -
Stsc30477g00006 247 MobiDBLite consensus disorder prediction 165 247 - -
Stsc30477g00006 247 FunFam Serine/arginine-rich splicing factor RS31 85 173 - -
Stsc30477g00006 247 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 91 162 IPR000504 GO:0003723
Stsc30477g00006 247 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 91 240 - -
Stsc30477g00006 247 SMART rrm1_1 92 158 IPR000504 GO:0003723
Stsc30477g00006 247 SMART rrm1_1 3 70 IPR000504 GO:0003723
Stsc30477g00006 247 Gene3D - 84 173 IPR012677 -
Stsc30477g00006 247 Gene3D - 1 83 IPR012677 -
Stsc30477g00006 247 SUPERFAMILY RNA-binding domain, RBD 2 164 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30477g00006 Stsc-Chr30477 46210 48930 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30477g00006 4 164 Eukaryotic Initiation Factors Gene Family AT1G49760 24.176 3.42e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30477g00006 K12893 - gmx:100797709 437.958