Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30477g00003 ATGACTAGTTCTGGTGGTGTATTGGCCTTGCCTCCTGTGAATAATGTGTTCAAAACAAGGGTGCCTCATGATTTTGAGGAGGATTTTGTAGAGAAAGATCCTACCGGACGGTACCTTAGGTACAATGAAATCTTGGGGAAAGGTGCCTTCAAGACTGTTTATAGGGCCTTTGATGAAGTCGAAGGAATAGAAGTTGCTTGGAACCAAGTTAGGATTGATGGCCTCTTGCACACACATACCGTTAACATGATCACCGAACTTTTTACATCTGGAAATTTAAGGCTGTATCGTCAAAGGCATAAATATGTTGAAGTGAAAGCCATAAAAGGCTGGGCTCGGCAGATTCTTCAAGGGTTAGCGTATCTTCACAGTCACAAACCACCTATAATTCACAGAGACTTGAAATGTGACAACATCTTTGTTAATGGAAACCATGGAGAAGTCAAGATAGGGGACCTAGGTTTGGCGATTGTCATGCAGCAACCAACGGCTCAAAGTGTTATTGGGACTCCTGAGTTTATGGCTCCAGAACTATATGAAGAGGAATACACTGAACTTGTTGACATTTATTCTTTTGGAATGTGCATACTAGAAATAGTTACTCTTGAGTATCCGTATTCTGAATGTAAAAACCCGGCTCAAATCTTTAAGAAAGTTACCTCGGGCATCAAACCTGCTTCCCTCAATAAGGTGAGCGACCCCCAAATTAGGCAATTTATTGAGAAATGTCTTGTTCCGGCATCTCAAAGATTGTCTGCAGAGGAGCTTCTTAAAGATCCGTTCCTGCAATTTGAGAATGGCCCTAGGCTAGGTCGTTGCAAGTCTCGCCTATCCCTTGACATAGATGGTGACTGCAGACAGCACTTTGCAAGTAGTGATGCCGGAAGCATCAAAGACAGTGTGCATAGTCCTGTTTTCGAAGTTAAGAGGACAAATAAGAACAACGAGTTTAGGTTGAGAGGGGCCAAAAATGTTGATAACTCGATATCATTGACCTTGCGTATTGCTGATACTAATGGTGGAGTAAGGAATATACATTTTCTGTTCTACCTTGATACAGATACTGCTCTCTCGGTGGCATCGGAGATGGTTGAGCATTTGGAGCTTGCGGATCATGATGTAGCCTTCATAGCTGACCTTATCGATTACTTGGTATTTAAGCTTCTACCTTGGTGGAAGCCTTCATCTACACGTGTAGATGGCCAAACAGTGACACGTCCATGGAGTCCTGTCCCAAACGGTGTTCCCTCCAAGCCAGTTGCTGGACGAGATAGCTTCTCCGAACTCAATGCATCCAGAGAAGCTTTTGTCTCAAATGAGAAGAGTAACCTTCCGCAGGAAGCCGATGATGCTTATTACCAGGACAATCCTAGTTCTTCTGCAAGTCTATGTGACTCGGAATATCAACATTCTCAAGGATCCACGATTTCAGAGGTTATTGTAGATGTTACTCATATGAAAAGTGACAACATTCTTTATTCCAATGGCGACGGAAACCTTAAATTCATAAGCGCTTCCCCCTCCATAAACGACTTTCATGATACGTTTTTCGAGGATTGCAAGTTGCACACAAGGGATTGTGGCTGTGGAGATGGCGAAGTGATAAATGAATTCTCATCAAAGAACAGCTTAGGGCCAATTTTCGAAAGGTCTCATTTTTCTTCTGTGTCTTCAACTACTGACATGGATTTTGAACTGAAGCTTGAGCTTCAAGAAATTGAGTCACAGTATCAAACATGGATTGATGAAATCTGTAGAATGAAGTTAGAGGCATTGGAAGCAGCCAAAAAGAGATGGATGGAGAAGAAGAAAGTTTCTGCTGCTGAAGCTTGTTGA 1836 0.4248 MTSSGGVLALPPVNNVFKTRVPHDFEEDFVEKDPTGRYLRYNEILGKGAFKTVYRAFDEVEGIEVAWNQVRIDGLLHTHTVNMITELFTSGNLRLYRQRHKYVEVKAIKGWARQILQGLAYLHSHKPPIIHRDLKCDNIFVNGNHGEVKIGDLGLAIVMQQPTAQSVIGTPEFMAPELYEEEYTELVDIYSFGMCILEIVTLEYPYSECKNPAQIFKKVTSGIKPASLNKVSDPQIRQFIEKCLVPASQRLSAEELLKDPFLQFENGPRLGRCKSRLSLDIDGDCRQHFASSDAGSIKDSVHSPVFEVKRTNKNNEFRLRGAKNVDNSISLTLRIADTNGGVRNIHFLFYLDTDTALSVASEMVEHLELADHDVAFIADLIDYLVFKLLPWWKPSSTRVDGQTVTRPWSPVPNGVPSKPVAGRDSFSELNASREAFVSNEKSNLPQEADDAYYQDNPSSSASLCDSEYQHSQGSTISEVIVDVTHMKSDNILYSNGDGNLKFISASPSINDFHDTFFEDCKLHTRDCGCGDGEVINEFSSKNSLGPIFERSHFSSVSSTTDMDFELKLELQEIESQYQTWIDEICRMKLEALEAAKKRWMEKKKVSAAEAC 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30477g00003 611 SMART serkin_6 39 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30477g00003 611 ProSiteProfiles Protein kinase domain profile. 1 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30477g00003 611 Gene3D Phosphorylase Kinase; domain 1 23 104 - -
Stsc30477g00003 611 MobiDBLite consensus disorder prediction 396 410 - -
Stsc30477g00003 611 FunFam probable serine/threonine-protein kinase WNK9 88 267 - -
Stsc30477g00003 611 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 24 75 - -
Stsc30477g00003 611 Pfam Protein kinase domain 78 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30477g00003 611 MobiDBLite consensus disorder prediction 396 423 - -
Stsc30477g00003 611 Gene3D Transferase(Phosphotransferase) domain 1 105 267 - -
Stsc30477g00003 611 SUPERFAMILY Protein kinase-like (PK-like) 33 263 IPR011009 -
Stsc30477g00003 611 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
Stsc30477g00003 611 Gene3D - 327 399 - -
Stsc30477g00003 611 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 329 385 IPR024678 GO:0004674|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30477g00003 Stsc-Chr30477 24142 27871 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30477g00003 26 389 MAP Kinase Kinase Kinase AT5G41990 55.529 1.10e-147 437
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Stsc30477g00003 Pkinase 3.1e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30477g00003 K08867 - gmx:100809602 753.051