Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30477g00001 ATGGAAGGGATAGGTCCCAACAACAACAATTCATGCACAACAAGGCCTCATCAAGGTGGTGGTGGAAATAATAATAATAATAACAACAATTTAGAGAAGAAAGCAAGGCCACAAGAGCAATTGAATTGTCCAAGGTGCAATTCAACAAACACAAAGTTTTGCTACTACAACAACTATAGCCTCACCCAACCAAGGTATTTTTGCAAGACTTGTAGAAGGTATTGGACTGAAGGTGGGTCCCTCCGGAATGTCCCTGTTGGTGGTGGATCAAGGAAGAACAAGATCAAGATCAATACCAATAACAATAATAATAATAACAACATCAACAACTCTTCATCATCATCAACAAATTCAAAGGTTGTTGTTCATCAAGACATAAACCCTAATAGTAGGGTTATTCAAGGACAAGATCTTAATCTTGCTTTTCCAACTATGGATCATCATCATCACAACAAGTATCATGGTTTGTTACCATTTGTTGATATGATTAATGGTAGTAATAATAATAATAATAGTAATAACGGTGATGCACCAAGTTCTCTTTCAGCTTTGGAGCTTTTAAGATCAAGCATGGCTTCTAGGGGTTTGAGTAATCCTTATGCTTCTTCTTCTAATTCATTGGTACCATCAAATTCAAGTGTAATTTACCCTCCTACTTCTGGATTAGGGTTTCCAACCATGCAAGAAGTAGTTAGTAATAAGCAAAATATTAGTAACCTTGGATTTTCTTCTCCTTCTTCATCATCAATTATGGATCATCATCATCATCATCAAGAGAATATTGTGAATAATGATAATAGTGGTGGAGGAAGAGTTCTTTTCCCTTTTGGAGAGGTTATGAAGGGTGCTGAAGAAGTTGGAAACAACAACAAAGAACAAGGGAATAATAATAATTCATCAAGCACTGCCCATGGTGGATATTGGAATGGAATGATGGGTGAAGGGTCATGGTGA 954 0.3658 MEGIGPNNNNSCTTRPHQGGGGNNNNNNNNLEKKARPQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKIKINTNNNNNNNNINNSSSSSTNSKVVVHQDINPNSRVIQGQDLNLAFPTMDHHHHNKYHGLLPFVDMINGSNNNNNSNNGDAPSSLSALELLRSSMASRGLSNPYASSSNSLVPSNSSVIYPPTSGLGFPTMQEVVSNKQNISNLGFSSPSSSSIMDHHHHHQENIVNNDNSGGGRVLFPFGEVMKGAEEVGNNNKEQGNNNNSSSTAHGGYWNGMMGEGSW 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30477g00001 317 MobiDBLite consensus disorder prediction 1 42 - -
Stsc30477g00001 317 MobiDBLite consensus disorder prediction 97 118 - -
Stsc30477g00001 317 MobiDBLite consensus disorder prediction 286 317 - -
Stsc30477g00001 317 Pfam Dof domain, zinc finger 39 94 IPR003851 GO:0003677|GO:0006355
Stsc30477g00001 317 ProSitePatterns Zinc finger Dof-type signature. 43 79 IPR003851 GO:0003677|GO:0006355
Stsc30477g00001 317 ProSiteProfiles Zinc finger Dof-type profile. 41 95 IPR003851 GO:0003677|GO:0006355
Stsc30477g00001 317 MobiDBLite consensus disorder prediction 288 306 - -
Stsc30477g00001 317 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 25 223 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30477g00001 Stsc-Chr30477 12408 13687 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30477g00001 33 317 C2C2-Dof Transcription Factor Family AT3G61850 44.337 5.53e-62 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Stsc30477g00001 zf-Dof 6.9e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30477g00001 - - aip:107623806 412.535