Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30475g00002 ATGGGGAGGGCTCCTTGTTGTGACAAAGCAAACGTGAAGAAAGGGCCATGGTCTCCTGAAGAAGATGCCAAGCTCAAATCATACATAGAACAACATGGCACTGGTGGTAATTGGATTGCTTTGCCTCAAAAAATTGGATTGAAGCGTTGTGGAAAGAGTTGCCGTTTAAGGTGGCTAAACTATCTTCGCCCTAATCTCAAGCATGGCGGTTTCTCTGAAGAAGAAGACAACATTATTTGCAGCCTCTATATTAGTATTGGAAGCAGGTGGTCAGTTATTGCTGCTCAATTGCCAGGAAGAACTGATAATGACATAAAGAACTATTGGAACACAAGGCTCAAAAAGAAGCTTCTTGGGAATAACAGGAACCGCCGCAACAAAGAACAACAACAGCAACAGTTTCAATTACCATGTAGCAATAATAATAATAGAAGCAACAAGCAAGAACAAACAACATCAATTAATAGAGGGAGGAGTAGTAGTGTTATTTTTGGTGATGATTCTTCCTTATTATCTTCCTTATTGGTTCATGAAAATAATAGTACTACTCAACAACAACCACAACAATGTTATTGGCCACACTTCATGCCACTGTTGCCAATACCAAATGTGCCCTATAGCAACCAATTCTTAGGGTCTTCTTTCAATGACCAAGATTCCATCAAGAAACTACTTATCAAGCTTGGAGGGAGATTCTATAATGATGTTGGTTATGATAATTACCATCCTACCCTTATGATGGATTGA 747 0.3922 MGRAPCCDKANVKKGPWSPEEDAKLKSYIEQHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNLKHGGFSEEEDNIICSLYISIGSRWSVIAAQLPGRTDNDIKNYWNTRLKKKLLGNNRNRRNKEQQQQQFQLPCSNNNNRSNKQEQTTSINRGRSSSVIFGDDSSLLSSLLVHENNSTTQQQPQQCYWPHFMPLLPIPNVPYSNQFLGSSFNDQDSIKKLLIKLGGRFYNDVGYDNYHPTLMMD 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30475g00002 248 MobiDBLite consensus disorder prediction 117 160 - -
Stsc30475g00002 248 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Stsc30475g00002 248 CDD SANT 71 113 IPR001005 -
Stsc30475g00002 248 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Stsc30475g00002 248 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Stsc30475g00002 248 CDD SANT 16 62 IPR001005 -
Stsc30475g00002 248 MobiDBLite consensus disorder prediction 124 160 - -
Stsc30475g00002 248 FunFam Transcription factor MYB36 70 149 - -
Stsc30475g00002 248 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Stsc30475g00002 248 Gene3D - 7 68 - -
Stsc30475g00002 248 Gene3D - 70 155 - -
Stsc30475g00002 248 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Stsc30475g00002 248 PANTHER OS09G0431300 PROTEIN 1 186 - -
Stsc30475g00002 248 FunFam Transcription factor RAX3 7 68 - -
Stsc30475g00002 248 SMART sant 67 115 IPR001005 -
Stsc30475g00002 248 SMART sant 13 64 IPR001005 -
Stsc30475g00002 248 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Stsc30475g00002 248 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30475g00002 Stsc-Chr30475 27424 29048 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30475g00002 1 131 MYB Transcription Factor Family AT3G49690 87.023 3.32e-82 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc30475g00002 Myb_DNA-binding 1.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30475g00002 K09422 - gmx:100800290 312.383