Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30475g00001 ATGAATTTTGATGATCATGGTATCTCCAATAACACAAGCCTTCAACTTGGTCTTGCTCTTGGAATTGGCCTCCATGAAGAGAAAAAGGAGGATGATTATTCATCAAAAAAATGCAACAATCATAAAATTAATAAGGCTTACCCATCTCTTACATTAGGACCATTAATAATTGATGATGATGATGATGATCAACATCAACAATTACAAGCTTCAAAGATTATTATTGAAGACTCTTGTTGTTCTACTCCAAGCCCAGTGTCATCATTTTCCAACTCTTCTAATATCATAATCAAGAAGGAGAAAGATCAATTCTTAGTTGAAGAATCTGAGGTTGAGATTGTTGATGAGAAGGTTTCATCATCATCAAGGGTATTACTACTTAGTGAAATAATTGATGAAGATGGTAACAACACAAAAAGGAAGAAACTTAGGCTCACAAAAGAACAATCTACAATCTTGGAGGAAAGCTTCAAGAAGCATTCTAATCCCAATCCGAAGCAAAAGCAAGAATTGGCAAGACAGTTGAACCTGCGGCCGAGACAAGTGGAGGTATGGTTCCAAAACAGGAGAGCCAGGACAAAGCTGAAACAAACTGAATCAGAGTGTGAGTTACTGAAGAAGTGTTGCAAAACTCTAACAGAAGAAAACAAGAGACTCCAAAACGAGCTTCAAGAACTCAAATCTTCAATGCAAACAACACCACCACCCTTTGCCATCCAAATTCCACCAACAACTACTCTTACTCTATGCCCTTCTTGTGACACAATTAATAATAATAATAATAATGGGGAATTATTGCTTATAAATTCAAAACCTCATCATCATCATTTCCACAAAAATAATGGATATCCATTATTCAAACAATCATCATCCGCTACATGCTAG 885 0.3593 MNFDDHGISNNTSLQLGLALGIGLHEEKKEDDYSSKKCNNHKINKAYPSLTLGPLIIDDDDDDQHQQLQASKIIIEDSCCSTPSPVSSFSNSSNIIIKKEKDQFLVEESEVEIVDEKVSSSSRVLLLSEIIDEDGNNTKRKKLRLTKEQSTILEESFKKHSNPNPKQKQELARQLNLRPRQVEVWFQNRRARTKLKQTESECELLKKCCKTLTEENKRLQNELQELKSSMQTTPPPFAIQIPPTTTLTLCPSCDTINNNNNNGELLLINSKPHHHHFHKNNGYPLFKQSSSATC 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30475g00001 294 SMART halz 196 240 IPR003106 GO:0006355|GO:0043565
Stsc30475g00001 294 SUPERFAMILY Homeodomain-like 127 197 IPR009057 -
Stsc30475g00001 294 Coils Coil 188 229 - -
Stsc30475g00001 294 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 16 261 - -
Stsc30475g00001 294 SMART HOX_1 138 200 IPR001356 GO:0003677
Stsc30475g00001 294 Pfam Homeodomain 139 194 IPR001356 GO:0003677
Stsc30475g00001 294 Pfam Homeobox associated leucine zipper 196 231 IPR003106 GO:0006355|GO:0043565
Stsc30475g00001 294 CDD homeodomain 139 197 IPR001356 GO:0003677
Stsc30475g00001 294 Gene3D - 133 203 - -
Stsc30475g00001 294 ProSitePatterns 'Homeobox' domain signature. 171 194 IPR017970 GO:0000981|GO:0006355
Stsc30475g00001 294 ProSiteProfiles 'Homeobox' domain profile. 136 196 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30475g00001 Stsc-Chr30475 3710 6594 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30475g00001 1 256 Homeobox Transcription Factor Family AT4G37790 44.828 1.45e-50 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Stsc30475g00001 Homeodomain 4.7e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30475g00001 K09338 - gmx:100807072 240.35