Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30474g00011 ATGGATATGGATATGGAAAAGATGCAGAATCATCAAAGTGTACATTTTGTTCTATCCACTGATGCAAAACCAAGGCTGAAATGGACTCCTGAGCTTCACCAAAGATTCATTGAGGCAGTTCATCAGCTTGGAGGTGCAGAGAAAGCAACCCCAAAGAGTCTTATGAGAGTGATGGGGATACAAGGACTTACTTTGTACCACCTGAAGAGCCATTTACAGAAATATAGACTTGGGAAAAGCCAAAACCTAGAAACCTGTTATGACAATCAACAAGAAGACTGCACTAAGATCAAGGGTAGTAATGGTCATTGCAGAAAGGAAAACAGTTTTGGGGAACAGAAACAAATCACTGAGAACAAGATAGCTCAGGCTCTCCATATGCAAATGGAGGTGCAAAGGAAACTTTGTGAACAAATTGAGGTGCAGAAACATTTACAGCTTCGAATTGAAGCTCAAGGGAAGTACTTGCAATCGGTGTTAAAGAAAGCACAAGATGCACTTCAAGGGTACAATTCTTCCACAATAGGACTAGAACTCACAAAAGCAGAACTCTCTCAACTAGTTACAGTGATCAACAATGCTTGTCCAAGTTCTCCAATCTCAGAACTCACAGAAACTAGAGGGTTAACTTTGAGAAGTGATGATGAGAGGAAACAAGACAAAGGAACCATGTGCTCATTGGAGAGTTCTTTGACATCTTCTGAAAGCGGTGGGAGAAAGGAACAGAAACACCAGCCAATTGAAGAAGAAACAACAAGGGACTTGAAATTTTTTAATGAAACTTCAATGAAATTTTCCTTTGAGGCATTTCATCAAACAGGTAAAGCGCAAAGTGGGGATGATTCAAGCAAAGGGGAAATTGGGAGAAAGAGAAATAAGAAAACTGATTCTGAAGGTAGCTACTGTGTTGAGCAACCATCTGGAAAAAGATGTGGCAACAAATTGAGGAAACTTGAGTTTGATTTGAACAACCAATATCACAGTGACACAGACTCAAGATAA 1002 0.3982 MDMDMEKMQNHQSVHFVLSTDAKPRLKWTPELHQRFIEAVHQLGGAEKATPKSLMRVMGIQGLTLYHLKSHLQKYRLGKSQNLETCYDNQQEDCTKIKGSNGHCRKENSFGEQKQITENKIAQALHMQMEVQRKLCEQIEVQKHLQLRIEAQGKYLQSVLKKAQDALQGYNSSTIGLELTKAELSQLVTVINNACPSSPISELTETRGLTLRSDDERKQDKGTMCSLESSLTSSESGGRKEQKHQPIEEETTRDLKFFNETSMKFSFEAFHQTGKAQSGDDSSKGEIGRKRNKKTDSEGSYCVEQPSGKRCGNKLRKLEFDLNNQYHSDTDSR 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30474g00011 333 MobiDBLite consensus disorder prediction 282 298 - -
Stsc30474g00011 333 MobiDBLite consensus disorder prediction 208 223 - -
Stsc30474g00011 333 NCBIfam myb-like DNA-binding domain, SHAQKYF class 23 78 IPR006447 GO:0003677
Stsc30474g00011 333 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 8 267 IPR044848 GO:0003700
Stsc30474g00011 333 Pfam Myb-like DNA-binding domain 25 76 IPR001005 -
Stsc30474g00011 333 Pfam MYB-CC type transfactor, LHEQLE motif 120 165 IPR025756 -
Stsc30474g00011 333 FunFam Myb family transcription factor 22 80 - -
Stsc30474g00011 333 MobiDBLite consensus disorder prediction 237 254 - -
Stsc30474g00011 333 MobiDBLite consensus disorder prediction 199 254 - -
Stsc30474g00011 333 MobiDBLite consensus disorder prediction 271 309 - -
Stsc30474g00011 333 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 20 80 IPR017930 -
Stsc30474g00011 333 Gene3D - 22 80 - -
Stsc30474g00011 333 SUPERFAMILY Homeodomain-like 22 78 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30474g00011 Stsc-Chr30474 51191 53097 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30474g00011 8 206 G2-like Transcription Factor Family AT1G69580 54.502 7.51e-68 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Stsc30474g00011 Myb_DNA-binding 1.3e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30474g00011 - - gmx:100787178 411.379