Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30474g00003 ATGGAGGATCAGGTTCTTGATGAGGCACCACCTGAAGAAGAAGAACAAGATGAAGAGTGTGTGGGTTCCAGCTTGACCATGGTGAAGGTAGCTGCTGCCAAGAAGTTCATCGAGAATCACTACAGAACCCACATGAAGAACATTCAAGACCGCAAGGAAAGACGTTGGGTTTTAGAAAGAAAATTAGCTTCTTCAGATGTGCCAAATGAGGAACGGATCAGCCTCATCAAAGATTTAGAGAGAAAGGAGACAGAATATATGCGATTGAAAAGGCACAAGATATGTGTTGATGATTTTGAGCTCTTAACAATCATTGGAAGGGGGGCCTATGGAGAGGTCAGACTGTGTCGGGAAAAAAAGTCTGGAAACATTTATGCCATGAAAAAACTGAAGAAGTCTGAAATGCTCAAGAAAGGCCAGGTGGAACATGTTAGAGCTGAGAGGAACTTGCTAGCTGAAGTAGCCAGTCATTGCATTGTGAAACTATACTACTCATTTCAAGATACTGAGTACTTGTATTTAATTATGGAGTATCTGCCTGGGGGTGATATGATGACTCTTCTAATTAGGGAGGAAACCTTAAGTGAAGATATTGCTAGATTTTACATTGCACAGAGTGTTCTAGCTATAGAGTCTATTCATAGGCATGGTTACATTCACAGAGATATAAAGCCTGATAACCTACTCTTGGACAAAAATGGTCATATGAAGCTATCAGATTTTGGCCTCTGTAAGCCTCTTGATTGTACCACCTTGTATACACTGCATGAAAATCAGATCGATGACAGAAATTTAGCAGAGCCAATGGATATTGATGGATCTATTCCTGGCATGGATAAGCATAGCAGTTGGAGAAATCCACGGGAGCAGCTTGTGCATTGGCAGATGAACAGGAGAAAGTTGGCCTTTTCTACAGTGGGAACACCAGACTACATTGCTCCCGAAGTACTTCTGAAGAAAGGATATGGGATGGAATGTGATTGGTGGTCACTGGGAGCAATAATGTATGAAATGCTAGTTGGTTACCCTCCATTTTACTCAGAAAACCCTATGACTACCTGCAGAAAGATTGTTCATTGGAGAAATTTCTTAAGGTTTTCAGAAGATGTACAGTTGTCTCCAGAAGCTAAGGATCTAATCTGCAGATTGATGTGTGATGTTGACCATAGATTAGGTACTCGAGGGGCACATGAAATCAAAGCTCATCCTTGGTTCAACGGTGTAAAGTGGGATAAACTGTATGAAATGGAGGCAGCATTCAAACCACAAGTCGTTGGAGAGCTGGATACACAGAACTTCATGAAATTTGATGAAGTCGATCCACCGACATCAGAGAGGCTTGGGTCAGGAACCTCCCGGAAGATGCCCAAAGACCTAAACTTCGTTGGTTACACTTACAAGAACTTCGACGCTGTAAAAGGACTTGGTCAAGGAGAGTCCATGCAAGAAATTTCTTCTAAATGGCCAGCTGAGGAAACGGGATTGCCAATGCTTGCATCATCCGGTGATCCCATGTTACCGTAG 1524 0.4239 MEDQVLDEAPPEEEEQDEECVGSSLTMVKVAAAKKFIENHYRTHMKNIQDRKERRWVLERKLASSDVPNEERISLIKDLERKETEYMRLKRHKICVDDFELLTIIGRGAYGEVRLCREKKSGNIYAMKKLKKSEMLKKGQVEHVRAERNLLAEVASHCIVKLYYSFQDTEYLYLIMEYLPGGDMMTLLIREETLSEDIARFYIAQSVLAIESIHRHGYIHRDIKPDNLLLDKNGHMKLSDFGLCKPLDCTTLYTLHENQIDDRNLAEPMDIDGSIPGMDKHSSWRNPREQLVHWQMNRRKLAFSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSENPMTTCRKIVHWRNFLRFSEDVQLSPEAKDLICRLMCDVDHRLGTRGAHEIKAHPWFNGVKWDKLYEMEAAFKPQVVGELDTQNFMKFDEVDPPTSERLGSGTSRKMPKDLNFVGYTYKNFDAVKGLGQGESMQEISSKWPAEETGLPMLASSGDPMLP 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30474g00003 507 MobiDBLite consensus disorder prediction 1 20 - -
Stsc30474g00003 507 CDD STKc_NDR_like 97 467 - -
Stsc30474g00003 507 Pfam Protein kinase domain 296 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30474g00003 507 Pfam Protein kinase domain 100 248 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30474g00003 507 ProSiteProfiles Protein kinase domain profile. 99 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30474g00003 507 SMART pkinase_C_6 406 468 IPR000961 GO:0004674|GO:0005524|GO:0006468
Stsc30474g00003 507 Pfam Protein kinase C terminal domain 426 466 IPR017892 GO:0004674|GO:0005524|GO:0006468
Stsc30474g00003 507 ProSiteProfiles AGC-kinase C-terminal domain profile. 406 476 IPR000961 GO:0004674|GO:0005524|GO:0006468
Stsc30474g00003 507 SUPERFAMILY Protein kinase-like (PK-like) 82 452 IPR011009 -
Stsc30474g00003 507 FunFam Non-specific serine/threonine protein kinase 183 250 - -
Stsc30474g00003 507 Gene3D Transferase(Phosphotransferase) domain 1 185 422 - -
Stsc30474g00003 507 Gene3D Phosphorylase Kinase; domain 1 90 184 - -
Stsc30474g00003 507 FunFam Non-specific serine/threonine protein kinase 304 423 - -
Stsc30474g00003 507 FunFam Non-specific serine/threonine protein kinase 60 182 - -
Stsc30474g00003 507 SMART serkin_6 99 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30474g00003 507 MobiDBLite consensus disorder prediction 483 507 - -
Stsc30474g00003 507 ProSitePatterns Protein kinases ATP-binding region signature. 105 128 IPR017441 GO:0005524
Stsc30474g00003 507 PANTHER SERINE/THREONINE-PROTEIN KINASE 14 444 - -
Stsc30474g00003 507 ProSitePatterns Serine/Threonine protein kinases active-site signature. 218 230 IPR008271 GO:0004672|GO:0006468
Stsc30474g00003 507 CDD MobB_NDR_LATS-like 33 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30474g00003 Stsc-Chr30474 13956 20587 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30474g00003 6 506 AGC Kinase Gene Family AT4G33080 74.656 0.0 773
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Stsc30474g00003 Pkinase 2.8e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30474g00003 K08790 - gmx:100815717 848.58