Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30474g00001 ATGTCAAATAATAATAATGATAATAGTAATATTTATTGTGAGGGAGAGTCAGGTGAGGGTGAGAGTGATGAGTTGAGCAACAATTGGGGTATTGAATTATCAGATTATTTGGCCATTGATGATGATACTCAATGGCTTGATGATGAGTCATTTGTTTCTCAGTATAATCTTAATCTTCAAAACCAGGTATTTCATCATCATCAAGCTATTCAAGTTGGAGAAGGTAGCACCAACTTTGAGGGCTCTTCAACCAATATAAACAGTGGGCATGAGAGGAGGGAAGCTAGACAGAGATATGCATTCAAAACAAAATCAGATGTTGAAGTGTTGGATGATGGATACAAGTGGAGGAAATATGGAAAAAAGATGGTCAAGAATAGCCCCAATCCAAGGAACTATTATAGGTGTTCAGTGGATGGATGCACAGTGAAAAAGAGAGTAGAGAGGGATAGGGATGATCCAAGGTATGTCATAACAACCTATGAAGGCATTCACATTCATCATCCTTCTTCTCATCGCTACTAG 525 0.381 MSNNNNDNSNIYCEGESGEGESDELSNNWGIELSDYLAIDDDTQWLDDESFVSQYNLNLQNQVFHHHQAIQVGEGSTNFEGSSTNINSGHERREARQRYAFKTKSDVEVLDDGYKWRKYGKKMVKNSPNPRNYYRCSVDGCTVKKRVERDRDDPRYVITTYEGIHIHHPSSHRY 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30474g00001 174 SMART WRKY_cls 110 169 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc30474g00001 174 MobiDBLite consensus disorder prediction 1 15 - -
Stsc30474g00001 174 FunFam WRKY transcription factor 57 96 170 - -
Stsc30474g00001 174 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 73 170 IPR044810 GO:0003700
Stsc30474g00001 174 SUPERFAMILY WRKY DNA-binding domain 103 169 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc30474g00001 174 ProSiteProfiles WRKY domain profile. 105 170 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc30474g00001 174 Pfam WRKY DNA -binding domain 111 167 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc30474g00001 174 Gene3D WRKY domain 97 163 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc30474g00001 174 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30474g00001 Stsc-Chr30474 868 2273 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30474g00001 98 167 WRKY Transcription Factor Family AT5G26170 84.286 5.78e-41 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Stsc30474g00001 WRKY 3.2e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30474g00001 - - gmx:100796836 197.593