Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30473g00011 ATGGGTGCTTCCGGTAAATGGGTCAAAGCATTTATCGGCCTCAAGAAGCCCTCCGACAAAGACCAACTCAATCCTCCTCATGGAAACAAGAGCAACAAAAAGTGGAGGCTATGGAGGACTTCCTCTGCGGACATGTCTTCATGGAAGCCCTTCAAATCCACCACCACACACAAGCCAGCCTCCCAATGCTCCGATTCACCACCCGCATCTTCAAAAGCCTTCACGGCTGCCATGGCCACCGTGGTTCGAGCTCCTCCCAAGGATTTCAGACTCGTCAAGCAAGAATGGGCTGCCATCAGAATCCAAACCGCTTTCCGCGGTTTCTTGGCAAGGAGAGCGTTGAGGGCGTTGAAGGGAGTGGTGAGGCTGCAGGCTCTTGTGAGGGGAAGACAGGTGAGGAAGCAGGCTGCAGTTACACTGAGGTGCATGCAGGCTCTGGTGCGCGTGCAGGCCAGAGTGCGTGCTCGCCGCGTCAGAATGTCCATTGAAGGACAAGCTGTTCAGGAGATGCTTAATCAGAGACGCTCCAAAGCTGATATTCTCAAGCAAGCTGAGGATGGTTGGTGTGATAGCAGAGGCACTCTTCAAGATGTTAAAGCCAAGTTACAATTGCGCCAACAAGGTGCCTTCAAGAGGGAGCGTGCCATTGCTTATTCTCTTGCTCAAAAGCAATGGAGATCAACCCCATGCTCAAGTTCAAGAACAAACCCTTCCCTCAAGAATATTGACTTTGATAAATCCAACTGGGGATGGAGTTGGTTGGAGCGTTGGATGGCTGCTAAGCCATGGGAGAGTAGATTAATGGAGGAGTCTCAGGCTGAAAAAAACTCAGATAAAACAACACCACCACCTACTAAGAAATCTGTGGACGCTTTTGGTGCAAATTCGAAACCGTTAGAACCTTCAAGCATGGTTAAAGTTAAGAAGAACAATGTCACAACAAGGGTTTCTGCTAGGCCACCCCAAATTATTGGACAAGCCACTCGTTCATCTTCAAGTCCAAGTTCCGAATTTCGGTATGATGAGAGTTCTGCATCATCTTCTATGTGTACATCCACAACACCAGTGTCTGGTAACACTTGTGATAGAACAGAAGAGGGTAGTAACAACAACAATAGGCCAAATTACATGAACTTGACAAAGTCAACAAAGGCAAAGCAAAGAAGTAGTAGCAATCAAGTGTATAATAGAGCTCAGAGGCAACAATCCATGGATGAGTTTCAGTTCCTCAAAAGGGTACCGGTTTTGTCTAATTTGGATGCAAAGAGCACTGCTGATTCTGATGACCCTTCGATCAACTTCTCAAGGCCACTTAACTTGGACAAGAGCTCAGTGAAACCACGGTGA 1347 0.4774 MGASGKWVKAFIGLKKPSDKDQLNPPHGNKSNKKWRLWRTSSADMSSWKPFKSTTTHKPASQCSDSPPASSKAFTAAMATVVRAPPKDFRLVKQEWAAIRIQTAFRGFLARRALRALKGVVRLQALVRGRQVRKQAAVTLRCMQALVRVQARVRARRVRMSIEGQAVQEMLNQRRSKADILKQAEDGWCDSRGTLQDVKAKLQLRQQGAFKRERAIAYSLAQKQWRSTPCSSSRTNPSLKNIDFDKSNWGWSWLERWMAAKPWESRLMEESQAEKNSDKTTPPPTKKSVDAFGANSKPLEPSSMVKVKKNNVTTRVSARPPQIIGQATRSSSSPSSEFRYDESSASSSMCTSTTPVSGNTCDRTEEGSNNNNRPNYMNLTKSTKAKQRSSSNQVYNRAQRQQSMDEFQFLKRVPVLSNLDAKSTADSDDPSINFSRPLNLDKSSVKPR 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30473g00011 448 Pfam IQ calmodulin-binding motif 96 115 IPR000048 GO:0005515
Stsc30473g00011 448 MobiDBLite consensus disorder prediction 306 400 - -
Stsc30473g00011 448 MobiDBLite consensus disorder prediction 421 448 - -
Stsc30473g00011 448 ProSiteProfiles IQ motif profile. 94 122 IPR000048 GO:0005515
Stsc30473g00011 448 SMART iq_5 116 137 IPR000048 GO:0005515
Stsc30473g00011 448 SMART iq_5 93 115 IPR000048 GO:0005515
Stsc30473g00011 448 MobiDBLite consensus disorder prediction 421 440 - -
Stsc30473g00011 448 MobiDBLite consensus disorder prediction 268 400 - -
Stsc30473g00011 448 Pfam Protein of unknown function (DUF4005) 343 394 IPR025064 -
Stsc30473g00011 448 PANTHER IQ-DOMAIN 5-RELATED 1 408 - -
Stsc30473g00011 448 ProSiteProfiles IQ motif profile. 118 145 IPR000048 GO:0005515
Stsc30473g00011 448 MobiDBLite consensus disorder prediction 16 69 - -
Stsc30473g00011 448 MobiDBLite consensus disorder prediction 28 69 - -
Stsc30473g00011 448 FunFam IQ-domain 11 93 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30473g00011 Stsc-Chr30473 60221 62496 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30473g00011 1 448 IQD Protein Family AT2G26180 57.174 3.26e-142 411
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30473g00011 - - gmx:100799714 573.163