Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30473g00010 ATGGATTTGAATTGGTTGTTCTTGTTGCCAATGAACGGTGACTCTGCTTCGTCAGCAGCAATATTATTCACTGCGGTAGCGATCATGGGAGGGTTGGTGGCGTATCTGTATGGGCCGCATTGGAAGGTGAGGAAGGTTCCAGGCCCACCAACATGGCCTCTCATAGGACACCTTCATCTCATGGCTAAGTATGGTCCTGATTTGTTCACACTTCTCGCCAAGAAATACGGCCTAATCTACAGATATCATATGGGAAGACAGCCACTAATAATAATAGCAGATGCAGAGCTTTGTAGAGAGGTTGGAACCAGAAAAGCAAAAGACATTCCACACAGAAGCGTACCCTCTCCTATTACAGCTGCTCCTATTCACCAAAAGGGTATATTCTTCTCCAGGGATGAACAATGGTCTACTATGAGAAGCACTGTTACTTCCTTCTTTCACACCTCATCCTTATCAAGCATGATCCCAACAATGCAGTCATTCATAGAATCTTCAACCCAGATTTTTGATTCCCATGCTGATACACAACAAGACATGGACTTCTCTAAGTTCTCTATCAAATTAGCAACTGATGTTGTTGGCCAAGCATCCTTTGGTGTCGACTTCGGCCTCTCTAAGCCTCATTCCACCACCAAAGATGGCGGCGACGAAGCATCACAGTTCATAAACCAACATGTCTTCAACACTACAAACCTCAAGATGGACTTGTCCGGTTCCTTATCCATCATAATTGGTCTGCTTCTCCCAATTCTTCAAGAGCCATGCAGGCAGATTCTCAAGAGGATACCTGGCACCATGGACTGGAAACTCGAGCGCGGTTATCGCGCTCTAGGTGGCCGTTTAGATAGGATTGTAGAGAAGAGAATGGAAGATAATAAGGGAAGAACTTCAAAGGATTACTTGTCAGTATTGCTGAGTGGAAGAGAAAGAAAACAGAACTACCTAACACAAGAATACATAAGTGCTCTTGCATATGAACAATTACTTACAGGATCAGCTACTGTTGCATTTTCCATGTCTTCCATTATATACTTGGTTGCAGCTCACCCTCATGTTGAGAAAAAGCTTCTTGAAGAGATTGATGGTTTTGGTCCAAAGGACAAGACTCCCACTCTTGAGGATCTTAAGGACAAGTTTCCTTATCTTGAACAGGTGATTCATGAATCAATGAGATATATGCCGTCATCCCCATTAATTGCAAGGGAAACAGCAACTGATGTAGAGATAGGAGGTTACTTACTTCCCAAGGGGGCCTGGGTGTGGTTATGCATCGGAGCTCTGTTAATGGATCCAAAAAACTTCCCGGAGCCAGAAAAGTTCAAGCCGGAGAGATTTGACCCGAACTGTGAAGAAATGAAACAAAGGCATCCCTCTGCTTTTTTGCCATTTGGAATAGGTTCCCGGATTTGCACAGGCAAGCAATTTGCTCAACAAGAGATAAAGCTTACAATGATTCATTTATACCGCAGATACGTGTTTCGCCACTCCCCTAACATGGAATACCCATTAGAATTCACCTATGGGCTTATTCGCAGTTTCAAGAACGGTGTCAAGGTCCGAGTTATAAAAAGGAGCAATGACTAG 1587 0.4373 MDLNWLFLLPMNGDSASSAAILFTAVAIMGGLVAYLYGPHWKVRKVPGPPTWPLIGHLHLMAKYGPDLFTLLAKKYGLIYRYHMGRQPLIIIADAELCREVGTRKAKDIPHRSVPSPITAAPIHQKGIFFSRDEQWSTMRSTVTSFFHTSSLSSMIPTMQSFIESSTQIFDSHADTQQDMDFSKFSIKLATDVVGQASFGVDFGLSKPHSTTKDGGDEASQFINQHVFNTTNLKMDLSGSLSIIIGLLLPILQEPCRQILKRIPGTMDWKLERGYRALGGRLDRIVEKRMEDNKGRTSKDYLSVLLSGRERKQNYLTQEYISALAYEQLLTGSATVAFSMSSIIYLVAAHPHVEKKLLEEIDGFGPKDKTPTLEDLKDKFPYLEQVIHESMRYMPSSPLIARETATDVEIGGYLLPKGAWVWLCIGALLMDPKNFPEPEKFKPERFDPNCEEMKQRHPSAFLPFGIGSRICTGKQFAQQEIKLTMIHLYRRYVFRHSPNMEYPLEFTYGLIRSFKNGVKVRVIKRSND 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30473g00010 528 Gene3D Cytochrome P450 37 528 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30473g00010 528 PRINTS P450 superfamily signature 331 348 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30473g00010 528 PRINTS P450 superfamily signature 471 482 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30473g00010 528 PRINTS P450 superfamily signature 462 471 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30473g00010 528 PRINTS P450 superfamily signature 385 396 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30473g00010 528 PANTHER THROMBOXANE-A SYNTHASE 19 526 - -
Stsc30473g00010 528 PRINTS E-class P450 group I signature 73 92 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30473g00010 528 PRINTS E-class P450 group I signature 424 448 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30473g00010 528 PRINTS E-class P450 group I signature 471 494 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30473g00010 528 PRINTS E-class P450 group I signature 340 366 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30473g00010 528 PRINTS E-class P450 group I signature 384 402 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30473g00010 528 PRINTS E-class P450 group I signature 461 471 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30473g00010 528 Pfam Cytochrome P450 47 500 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30473g00010 528 SUPERFAMILY Cytochrome P450 40 525 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30473g00010 Stsc-Chr30473 57219 59851 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30473g00010 84 525 Cytochrome P450 AT2G26170 62.864 0.0 543
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30473g00010 K20771 - gmx:100797803 688.337