Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30473g00008 ATGGATTTGAATAACGGTGACTCTGCTTCATCAGCAGCAATATTATTCACTGTAATAGCAATTATAGGAGGGTTGCTAGCCTATCTGTATGGGCCGTATTGGAAGGTGAGGAAGGTTCCAGGCCCACCAACATGGCCTCTCATAGGACACCTTCATCTCATGGCTAAGTACGGTCCTGATTTGTTCACTCTTCTCGCCAAGAAATATGGCCCAATCTACAGATTTCATATGGGAAGACAGCCACTAATAATAGTAGCAGAAGCAGAGCTTTGTAGGGAGGTTGGAACCAAAAAAGCAAAAGACATACCACACAGAAGCATACCCTCTCCTATCACAGCTGCCCCTATTCACCAAAGAGGTATATTCTTCTCCAGGGATGAACAATGGTCTACCATGAGAAGCACTGTTACTTCCTTCTTTCACACCTCATCCCTATCAACTATGATCCCCACAATGCAGTCATTCATAGAATCTGCAACCCAAATTCTTGATTCCCATGCACAAACAAAACAAGAAATCAACTTCACTAACTTTGCTCTAAGATTAGCAACCGATGTTATTGGCCAAGCATCCTTTGGTGTCAACTTCGGCCTCTCTAAGCCTCATTCCACCACCAAAGATGGCGGCGACGAAGCATCACAGTTCATCAACCAACATATCTTCAACACTACAAACCTCAAGATGGACTTGTCCGGTTCCTTATCCATCATAATTGGTCTAATTCTCCCAATTCTTCAGGAGCCATGCAAGCAGATTCTCAAGAGGATTCCTGGCACCATGGATTGGAAACTCGAGCGCGGTAATCGCGATCTAAGTGGGCGTTTAGATAGGATTGTAGAGAAGAGAATGGAAGATAAGGGAAGAAGTTCAAAAGATTTCTTGTCAGCTGTGTTGAGTGGAAGAGAAAGAAAACAGAACTACCTGACACCAGAGTATATTAGTGCTCTTGCATATGAACAATTACTTGCAGGATCAGCTACCACAGCCTTTACCATGTCTTCCATTATATATTTGGTTGCAGAGCACCCTCATGTTGAGAAAAAGCTTCTTGAAGAGATTGATGGTTTTGGCCCAAAGGACAAGACTCCCACTCCTGAGGATCTTAAGGACAGCTTTCCTTATCTTGAACAGGTGATTAATGAGTCAATGAGATATTTTGCCACATCCCCATTAATTGCAAGGGAAACAGCAAATGATGTAGAGTTAGGAGGTTACTTACTTCCCAAGGGGACTTGGGTGTGGTTGGCCGTGGGAGCTCTATCAAAGGACCCAAAGAACTTTCCGGAGCCAGAAAAGTTCAAACCGGAGAGGTTTAACCCAAACAGTGATGAAATGAAAGGAAGGCATGCTGGTGCTTTTTTACCATTTGGAATTGGTTCCCGGATTTGCATTGGCAAACAATATGCTCAACAAGAGATAAAGCTCACAATGATTCATTTATACCGCAGATACGTGTTTCGCCACTCGCCTAACATGGAAAACCCTATAGAATTTGACTATGGGCTTATTCTCAATTTCAAGAACGGTGTCAAGGTCCATGTTATAAAAAGAAATATTGACTAG 1563 0.4293 MDLNNGDSASSAAILFTVIAIIGGLLAYLYGPYWKVRKVPGPPTWPLIGHLHLMAKYGPDLFTLLAKKYGPIYRFHMGRQPLIIVAEAELCREVGTKKAKDIPHRSIPSPITAAPIHQRGIFFSRDEQWSTMRSTVTSFFHTSSLSTMIPTMQSFIESATQILDSHAQTKQEINFTNFALRLATDVIGQASFGVNFGLSKPHSTTKDGGDEASQFINQHIFNTTNLKMDLSGSLSIIIGLILPILQEPCKQILKRIPGTMDWKLERGNRDLSGRLDRIVEKRMEDKGRSSKDFLSAVLSGRERKQNYLTPEYISALAYEQLLAGSATTAFTMSSIIYLVAEHPHVEKKLLEEIDGFGPKDKTPTPEDLKDSFPYLEQVINESMRYFATSPLIARETANDVELGGYLLPKGTWVWLAVGALSKDPKNFPEPEKFKPERFNPNSDEMKGRHAGAFLPFGIGSRICIGKQYAQQEIKLTMIHLYRRYVFRHSPNMENPIEFDYGLILNFKNGVKVHVIKRNID 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30473g00008 520 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 456 465 IPR017972 GO:0005506|GO:0016705
Stsc30473g00008 520 CDD cytochrome_P450 70 510 - -
Stsc30473g00008 520 FunFam Cytochrome P450 3A4 26 519 - -
Stsc30473g00008 520 SUPERFAMILY Cytochrome P450 33 517 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30473g00008 520 Pfam Cytochrome P450 40 498 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30473g00008 520 PRINTS E-class P450 group I signature 332 358 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30473g00008 520 PRINTS E-class P450 group I signature 416 440 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30473g00008 520 PRINTS E-class P450 group I signature 453 463 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30473g00008 520 PRINTS E-class P450 group I signature 312 329 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30473g00008 520 PRINTS E-class P450 group I signature 182 200 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30473g00008 520 PRINTS E-class P450 group I signature 376 394 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30473g00008 520 PRINTS E-class P450 group I signature 66 85 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30473g00008 520 PRINTS E-class P450 group I signature 463 486 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30473g00008 520 PANTHER THROMBOXANE-A SYNTHASE 12 518 - -
Stsc30473g00008 520 Gene3D Cytochrome P450 29 519 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30473g00008 520 PRINTS P450 superfamily signature 377 388 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30473g00008 520 PRINTS P450 superfamily signature 323 340 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30473g00008 520 PRINTS P450 superfamily signature 454 463 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30473g00008 520 PRINTS P450 superfamily signature 463 474 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30473g00008 Stsc-Chr30473 53080 56069 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30473g00008 77 517 Cytochrome P450 AT2G26170 63.229 0.0 558
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30473g00008 K20771 - gmx:100797803 713.375