LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc30473g00007	ATGGCGGGAATTAGAGTGAAGGAGGAAGAAGAGACGGTGGTTTTGTGTGGAGGCGGACCGGGCGGTTCATCTTCTTCATCAAGCGTGTCACCACAGCCTATGGAAGGGTTGCACGATGTGGGACCACCGCCGTTTCTGAGCAAGACGTTCGAAGTGGTGGAGGATCCTTCCACCGATCCCATTGTTTCTTGGAGCAGAGCGCGCAACAGCTTCGTTGTTTGGGACTCGCACAGATTCTCCACCACAATCTTGCCTCGTTACTTCAAGCACAACAACTTCTCCAGCTTCGTTCGCCAACTCAACACTTACGGTTTCAGGAAAGTTGATCCAGATCGATGGGAGTTTGCGAACGAGGGGTTCTTGGCGGGGCAGAAGCACTTGTTGAAGACGATAAAGAGGAGGAGGAATGTGACACAGTCGTCTTCATCGAGCATGATCCAGCATGGAGTTGGAGGAGGAGGAGGAAGCTGTGTTGAGCTGGGTGAGTATGGTTTGGAAGGTGAGATTGAGAGGCTGAGAAGGGATAGGACGGTGTTAATGGCGGAGATCGTGAAGCTGAGGCATCAACAGCACAACTCGAGGGAGGTGCTTTGTTCAATGGAGTCAAGGTTGCAAATCACAGAGAAGAAACAGACTCAGATGATGACCTTCCTCGCTAAAGCACTTAACAACCAGTCTTTCATTCATAACTTATCTAATCAGAACAGAGAATTGCAGGGTGTTGAGATGAGCAGGAGGAAGAGGAGAATAACGGACACTGCAACTGTGGATGGAGAAGAGCAAGAGGAATTGGCCGGTATTGGGTGTGAGATGGAGACACTCTTGTCAAGTGCTTGTGATAATGAATCCAGCAGTGAAATGAAGGAGCCTAATACATCTGCTGCTGCTGCTACGAATGAGAGTATTTGGGAGGATTTGCTGAGTGAGGATTTGGTTGGTGGGAATCCAGAGGATGAAGTTGTGATTGGTGATTACCCTGATCAACAACTTGAGGATTTGGCTGCAAACACTGGTGATTGGTCTGAGGACTTGCAGAATCTTGTGGATCATATGGGTTTTCTTGCCTCTAATCCATAA	1077	0.4875	MAGIRVKEEEETVVLCGGGPGGSSSSSSVSPQPMEGLHDVGPPPFLSKTFEVVEDPSTDPIVSWSRARNSFVVWDSHRFSTTILPRYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLAGQKHLLKTIKRRRNVTQSSSSSMIQHGVGGGGGSCVELGEYGLEGEIERLRRDRTVLMAEIVKLRHQQHNSREVLCSMESRLQITEKKQTQMMTFLAKALNNQSFIHNLSNQNRELQGVEMSRRKRRITDTATVDGEEQEELAGIGCEMETLLSSACDNESSSEMKEPNTSAAAATNESIWEDLLSEDLVGGNPEDEVVIGDYPDQQLEDLAANTGDWSEDLQNLVDHMGFLASNP	358

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc30473g00007	358	Pfam	HSF-type DNA-binding	45	134	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Stsc30473g00007	358	MobiDBLite	consensus disorder prediction	19	33	-	-
	Stsc30473g00007	358	MobiDBLite	consensus disorder prediction	1	38	-	-
	Stsc30473g00007	358	ProSitePatterns	HSF-type DNA-binding domain signature.	84	108	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Stsc30473g00007	358	SMART	hsfneu3	41	134	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Stsc30473g00007	358	Gene3D	-	38	135	IPR036388	-
	Stsc30473g00007	358	FunFam	Heat shock transcription factor 1	38	135	-	-
	Stsc30473g00007	358	Coils	Coil	169	189	-	-
	Stsc30473g00007	358	PRINTS	Heat shock factor (HSF) domain signature	45	68	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Stsc30473g00007	358	PRINTS	Heat shock factor (HSF) domain signature	96	108	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Stsc30473g00007	358	PRINTS	Heat shock factor (HSF) domain signature	83	95	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Stsc30473g00007	358	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	31	271	IPR027725	-
	Stsc30473g00007	358	SUPERFAMILY	"Winged helix" DNA-binding domain	41	134	IPR036390	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc30473g00007	Stsc-Chr30473	47564	49838	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc30473g00007	31	358	HSF	AT2G26150	52.522	6.36e-120	348

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Stsc30473g00007		HSF_DNA-bind	2.4e-32	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc30473g00007	K09419		-	gmx:100794605	431.409