Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30473g00002 ATGGCATCTGCATCAAGTGAGATAAGTGCCTCAATTTCGCTACCATCAAAGAAGAAGAGAAATCAGCCAGGCCACCCAGATCCTGATGCTGAAGTGATAGCGTTGTCACCAAAGAGCTTGTTGGCAACAAACCGGTTCGTATGTGATGTTTGCAACAAAGGGTTTCAGAGAGACCAGAATCTGCAGCTTCATAGAAGGGGACACAATCTGCCATGGAAGCTAAAGCAAAGAAGTAACAAAGAGGTAATAAGGAAGAAGGTGTACGTGTGTCCAGAGCCAACTTGCGTTCACCATCACCCCTCGAGGGCACTCGGCGACCTCACCGGAATCAAGAAGCACTTCTGTAGAAAGCACGGCGAAAAGAAGTGGAAGTGTGACAAGTGCTCCAAGCGCTACGCCGTTCATTCTGATTGGAAAGCTCACTCCAAAATCTGTGGCACCAGAGAGTACAAATGTGATTGCGGTACCATTTTTTCCAGGAGGGATAGTTTCATAGCTCACAGGGCATTCTGTGATGCTCTAGCACAGGAGAGTAGCAGAACAATCACAACTTTATTCAAACCATCATCATCATCGTCATCAGTGAAGAAGGAATTGAAAGATGTTAATTTAAGATCAGAAAATATTATTCCTTCATGGTTTTCATACTCAACATCAGTTGGGGTGGGAGGAGAAGCAAGCCATCATGGAAGAGTAGCTCAAAATAATAATCCACCGTTATTATTCTCCTCGCAGCTGCCACCGCCGTCTTCGTCGTCGCTCTCTACAATTCACCATGAAAACCCTAACCCTAATAATTCTTTAATATTTGAAGGCATGGCTGCTTCTAATTCTGCTACTGCATTGTTACAACAGGCATCGGAAATAGGTGCAAAACCCTATCTACACAATGCTCATCATCATCATCACGCGCCTGAAAGCACCACTACCTTGTCGTCAATGCCGCCCATATCTTCTTCGTTATCATCTGTTTCTGGATTATTGGACATGGCTTCACGTGAAGAGATAGGGACCGGGACTATGTTTACTCGTCATCATTATCAAGGATTCTTGGAATCTTATGAGAGTAATAACAAAGGGGATGATTATGAGCACACCAATAAAGAAGCTTCTCTTGTTGTTCATGGTGATATGATGATGGATCATCATGGTACTAGTACCAGCTTTGAGGAAGCTCTAATGATGAGAGGAATGGTGAACAATAATCCAAAGAGAGAAGATTGTGATGATAATAATAATAATTATAATAAAAATAACTTAGATGGACTTGTTTCAAGATCGATGGGATCCCATCATGGCGGTTTCAAAGATGAGACGAGAGATTTTCTGGGGATTGGTGTGTTTTCTCAGAGAGACCTTTTCGATATATCTGGTCTTCATCATCATCATCATCATTTGGATTCTTCTTCGTATGGCAACCAGCAAAATCAAAAGCAACCACCCTGGCGAGGTTAA 1455 0.4268 MASASSEISASISLPSKKKRNQPGHPDPDAEVIALSPKSLLATNRFVCDVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKEVIRKKVYVCPEPTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVHSDWKAHSKICGTREYKCDCGTIFSRRDSFIAHRAFCDALAQESSRTITTLFKPSSSSSSVKKELKDVNLRSENIIPSWFSYSTSVGVGGEASHHGRVAQNNNPPLLFSSQLPPPSSSSLSTIHHENPNPNNSLIFEGMAASNSATALLQQASEIGAKPYLHNAHHHHHAPESTTTLSSMPPISSSLSSVSGLLDMASREEIGTGTMFTRHHYQGFLESYESNNKGDDYEHTNKEASLVVHGDMMMDHHGTSTSFEEALMMRGMVNNNPKREDCDDNNNNYNKNNLDGLVSRSMGSHHGGFKDETRDFLGIGVFSQRDLFDISGLHHHHHHLDSSSYGNQQNQKQPPWRG 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30473g00002 484 MobiDBLite consensus disorder prediction 463 484 - -
Stsc30473g00002 484 SMART c2h2final6 123 143 IPR013087 -
Stsc30473g00002 484 SMART c2h2final6 46 68 IPR013087 -
Stsc30473g00002 484 MobiDBLite consensus disorder prediction 469 484 - -
Stsc30473g00002 484 FunFam protein indeterminate-domain 5, chloroplastic-like 101 180 - -
Stsc30473g00002 484 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 10 464 IPR031140 -
Stsc30473g00002 484 Gene3D Classic Zinc Finger 116 182 - -
Stsc30473g00002 484 MobiDBLite consensus disorder prediction 1 31 - -
Stsc30473g00002 484 Gene3D Classic Zinc Finger 46 90 - -
Stsc30473g00002 484 MobiDBLite consensus disorder prediction 1 18 - -
Stsc30473g00002 484 ProSiteProfiles Zinc finger C2H2 type domain profile. 46 68 IPR013087 -
Stsc30473g00002 484 ProSitePatterns Zinc finger C2H2 type domain signature. 48 68 IPR013087 -
Stsc30473g00002 484 FunFam protein indeterminate-domain 12-like 25 94 - -
Stsc30473g00002 484 SUPERFAMILY beta-beta-alpha zinc fingers 45 143 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30473g00002 Stsc-Chr30473 14919 17200 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30473g00002 17 291 IDZ Gene Family AT1G55110 58.885 2.96e-112 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc30473g00002 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30473g00002 K25870 - qsu:112016383 396.356