Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Stsc30473g00002 | ATGGCATCTGCATCAAGTGAGATAAGTGCCTCAATTTCGCTACCATCAAAGAAGAAGAGAAATCAGCCAGGCCACCCAGATCCTGATGCTGAAGTGATAGCGTTGTCACCAAAGAGCTTGTTGGCAACAAACCGGTTCGTATGTGATGTTTGCAACAAAGGGTTTCAGAGAGACCAGAATCTGCAGCTTCATAGAAGGGGACACAATCTGCCATGGAAGCTAAAGCAAAGAAGTAACAAAGAGGTAATAAGGAAGAAGGTGTACGTGTGTCCAGAGCCAACTTGCGTTCACCATCACCCCTCGAGGGCACTCGGCGACCTCACCGGAATCAAGAAGCACTTCTGTAGAAAGCACGGCGAAAAGAAGTGGAAGTGTGACAAGTGCTCCAAGCGCTACGCCGTTCATTCTGATTGGAAAGCTCACTCCAAAATCTGTGGCACCAGAGAGTACAAATGTGATTGCGGTACCATTTTTTCCAGGAGGGATAGTTTCATAGCTCACAGGGCATTCTGTGATGCTCTAGCACAGGAGAGTAGCAGAACAATCACAACTTTATTCAAACCATCATCATCATCGTCATCAGTGAAGAAGGAATTGAAAGATGTTAATTTAAGATCAGAAAATATTATTCCTTCATGGTTTTCATACTCAACATCAGTTGGGGTGGGAGGAGAAGCAAGCCATCATGGAAGAGTAGCTCAAAATAATAATCCACCGTTATTATTCTCCTCGCAGCTGCCACCGCCGTCTTCGTCGTCGCTCTCTACAATTCACCATGAAAACCCTAACCCTAATAATTCTTTAATATTTGAAGGCATGGCTGCTTCTAATTCTGCTACTGCATTGTTACAACAGGCATCGGAAATAGGTGCAAAACCCTATCTACACAATGCTCATCATCATCATCACGCGCCTGAAAGCACCACTACCTTGTCGTCAATGCCGCCCATATCTTCTTCGTTATCATCTGTTTCTGGATTATTGGACATGGCTTCACGTGAAGAGATAGGGACCGGGACTATGTTTACTCGTCATCATTATCAAGGATTCTTGGAATCTTATGAGAGTAATAACAAAGGGGATGATTATGAGCACACCAATAAAGAAGCTTCTCTTGTTGTTCATGGTGATATGATGATGGATCATCATGGTACTAGTACCAGCTTTGAGGAAGCTCTAATGATGAGAGGAATGGTGAACAATAATCCAAAGAGAGAAGATTGTGATGATAATAATAATAATTATAATAAAAATAACTTAGATGGACTTGTTTCAAGATCGATGGGATCCCATCATGGCGGTTTCAAAGATGAGACGAGAGATTTTCTGGGGATTGGTGTGTTTTCTCAGAGAGACCTTTTCGATATATCTGGTCTTCATCATCATCATCATCATTTGGATTCTTCTTCGTATGGCAACCAGCAAAATCAAAAGCAACCACCCTGGCGAGGTTAA | 1455 | 0.4268 | MASASSEISASISLPSKKKRNQPGHPDPDAEVIALSPKSLLATNRFVCDVCNKGFQRDQNLQLHRRGHNLPWKLKQRSNKEVIRKKVYVCPEPTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVHSDWKAHSKICGTREYKCDCGTIFSRRDSFIAHRAFCDALAQESSRTITTLFKPSSSSSSVKKELKDVNLRSENIIPSWFSYSTSVGVGGEASHHGRVAQNNNPPLLFSSQLPPPSSSSLSTIHHENPNPNNSLIFEGMAASNSATALLQQASEIGAKPYLHNAHHHHHAPESTTTLSSMPPISSSLSSVSGLLDMASREEIGTGTMFTRHHYQGFLESYESNNKGDDYEHTNKEASLVVHGDMMMDHHGTSTSFEEALMMRGMVNNNPKREDCDDNNNNYNKNNLDGLVSRSMGSHHGGFKDETRDFLGIGVFSQRDLFDISGLHHHHHHLDSSSYGNQQNQKQPPWRG | 484 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Stsc30473g00002 | 484 | MobiDBLite | consensus disorder prediction | 463 | 484 | - | - | |
Stsc30473g00002 | 484 | SMART | c2h2final6 | 123 | 143 | IPR013087 | - | |
Stsc30473g00002 | 484 | SMART | c2h2final6 | 46 | 68 | IPR013087 | - | |
Stsc30473g00002 | 484 | MobiDBLite | consensus disorder prediction | 469 | 484 | - | - | |
Stsc30473g00002 | 484 | FunFam | protein indeterminate-domain 5, chloroplastic-like | 101 | 180 | - | - | |
Stsc30473g00002 | 484 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 10 | 464 | IPR031140 | - | |
Stsc30473g00002 | 484 | Gene3D | Classic Zinc Finger | 116 | 182 | - | - | |
Stsc30473g00002 | 484 | MobiDBLite | consensus disorder prediction | 1 | 31 | - | - | |
Stsc30473g00002 | 484 | Gene3D | Classic Zinc Finger | 46 | 90 | - | - | |
Stsc30473g00002 | 484 | MobiDBLite | consensus disorder prediction | 1 | 18 | - | - | |
Stsc30473g00002 | 484 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 46 | 68 | IPR013087 | - | |
Stsc30473g00002 | 484 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 48 | 68 | IPR013087 | - | |
Stsc30473g00002 | 484 | FunFam | protein indeterminate-domain 12-like | 25 | 94 | - | - | |
Stsc30473g00002 | 484 | SUPERFAMILY | beta-beta-alpha zinc fingers | 45 | 143 | IPR036236 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Stsc30473g00002 | Stsc-Chr30473 | 14919 | 17200 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Stsc30473g00002 | 17 | 291 | IDZ Gene Family | AT1G55110 | 58.885 | 2.96e-112 | 337 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Stsc30473g00002 | None | None | None |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Stsc30473g00002 | K25870 | - | qsu:112016383 | 396.356 |