Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30470g00003 ATGAGTAGTAGTGATGTTGAAAATTCCATGAGGCTTCAACAGCAAGAGAAAAAGGCTTCATTGGATTTGAGGACAAGTGCTTCAGAAATGGCAAATCCCTTTCTTGCTTCCTCTGCTTGGGATCCTCTTACACCCTTACCTCAACTTCAAACTACCAATACTACTACTCAAATACCAATGGTTTCTCATCATAATAATGAATTCTCCAATTCACTGTTGTGCCCTTTTGTTTTGGAAAACCAGCAAGATCCTCAAATAGTTCAGCACATGTCTAGGGACATGGTTCCAAACCCCAAGGTTCAGGTTCCTATGTCCTATGGAAGTGGGAGCTTCTCGGAAATGGTTGGCTCCTTTCTCCAATCTCCAAATAATGAGCACTCACAGGGAGATGGAGAAGATTCAGGATCAGCACCTGGTGGAAATAGAAGAAGAAAGAGAGGCCATGAATATAAGAATGATGAAGGGGGTGTTAGTGTGACTAAAGATCAGGATGATCAGAAGAAATCAAAAGTGGAAGAAAATCAAGACAAAAGTACTCAAAGTGGAGAAGCACTACCTAAAGAGAATAATTTCATTCATGTGAGAGCAAGAAGAGGCCAAGCTACTAACAGTCACAGCCTTGCTGAAAGGGTAAGGAGAGAAAAGATTAGTGAGAGAATGAGGTTGCTTCAAGAACTTGTTCCTGGATGCAACAAGATAACTGGCAAAGCAGTGATGCTTGATGAGATTATAAACTATGTGCAATCATTGCAACAGCAGGTTGAGTTTTTGTCAATGAAACTTGCCACTGTGAATCCAGAGCTGAATTTGGACCTAGAGGGGATCCTATCAAAAGATTCAAGAATTGGTGGATATGGTGGTGGTATAAGCTGCTCTCAAGCATTCCCCAGTTCTAGCTTCCAAGGAACACTAGTGCCCATGGCTACCACTTCAAATCAGCTCCCTCCATTGCCCCAGAGTGTGTTGGAGCATGAGTTCCAAAACTTGTATGGAATGAGCTACGATTCCAGTACAGCTCTTGGGAACATGGGACACAATGGAGGGTCCAAATCAGAGTTATAG 1062 0.4247 MSSSDVENSMRLQQQEKKASLDLRTSASEMANPFLASSAWDPLTPLPQLQTTNTTTQIPMVSHHNNEFSNSLLCPFVLENQQDPQIVQHMSRDMVPNPKVQVPMSYGSGSFSEMVGSFLQSPNNEHSQGDGEDSGSAPGGNRRRKRGHEYKNDEGGVSVTKDQDDQKKSKVEENQDKSTQSGEALPKENNFIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNLDLEGILSKDSRIGGYGGGISCSQAFPSSSFQGTLVPMATTSNQLPPLPQSVLEHEFQNLYGMSYDSSTALGNMGHNGGSKSEL 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30470g00003 353 Gene3D - 197 271 IPR036638 GO:0046983
Stsc30470g00003 353 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 200 250 IPR011598 GO:0046983
Stsc30470g00003 353 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 198 267 IPR036638 GO:0046983
Stsc30470g00003 353 MobiDBLite consensus disorder prediction 105 131 - -
Stsc30470g00003 353 CDD bHLH_AtBPE_like 190 275 - -
Stsc30470g00003 353 MobiDBLite consensus disorder prediction 105 189 - -
Stsc30470g00003 353 Pfam Helix-loop-helix DNA-binding domain 203 251 IPR011598 GO:0046983
Stsc30470g00003 353 MobiDBLite consensus disorder prediction 137 177 - -
Stsc30470g00003 353 SMART finulus 206 256 IPR011598 GO:0046983
Stsc30470g00003 353 MobiDBLite consensus disorder prediction 1 25 - -
Stsc30470g00003 353 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 101 306 IPR024097 GO:0006355
Stsc30470g00003 353 FunFam Basic helix-loop-helix transcription factor 197 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30470g00003 Stsc-Chr30470 29909 32792 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30470g00003 31 353 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G10120 44.000 1.14e-67 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc30470g00003 HLH 3.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30470g00003 - - adu:107461155 545.043