Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30470g00002 ATGAAGTGGATGAATAGTAGTGGTAATAGTAACATGAGCAGCCATGATGGTAACAATCAAAGCTGGTTGGGGTTCTCTCTCTCTCCCCATCATCATCACATGAAATTCGACCTTCCTAATTCTAATTCTTCCTCCACTTCTTCTTGCTCTTCTTCCTATGGTGGAGATCACACTACTGCTGCCTTTCATCCTCATCAGTTGAGTGTGATGCCTCTCAAGTCAGATGGCTCACTTTGCATCATGGAAGCTCTCACTAGATCACATCAAACACAACAAGTGATGGTGGGAAGTTGTTCATCTCCAAAACTGGAAGACTTTCTGGGTGGTGCAACGATGGGAACACATGAAAGAGAGGCAATGGCTTTAAGCCTTGACACCATGTACTACCCCCTTCATAGAGGGCTTGTCTCATCAGAGCCTTTCAGGCATCAATCATCACATCCACCATATTACTCATCACTTGCCTGCCATGGCATGTACCAAGCACCACCTCCAACCATAGAGGAAGAACAACCCAAGGGAGGAGCAGCACATGATGTCCCCCACATAGCAGAACAACAAGAACAAGGCATTGCTGGATTCAAGAACTGGGTGGTGGAGCAGCAGCAACTCAATAATAACAATAACAAGTTTGGTGGTGCAGTGGAGTTGCAATCACTGAGTCTGTCAATGAGTCCAGGGTCAGAGTCAAGTTGTGTAACAGCTGCAAGGCATGAGAATGGGAAGAGTAGTGAGTCAGCAGGAGCAGTAGTAGTAATGGATAATAGCAACAAGAAGAGAGGGCTAAGTAACAAGCAACCAGTCCACAGAAAATCCATTGACACTTTTGGTCAGAGAACTTCTCAGTATCGAGGTGTCACCAGGCATAGATGGACTGGTAGATATGAAGCACATTTGTGGGATAACACTTGCAAGAAGGAAGGCCAGACTAGGAAAGGAAGACAGGTATATTTGGGGGGTTATGATATGGAAGAAAAAGCTGCAAGAGCCTATGATCTTGCTGCCCTCAAGTACTGGGGACCTTCAACCCACATCAACTTTCCGTTGGAAAATTACCAAGCGGAACTTGAGGACATGAAGAACATGACCAGGCAGGAATATGTCGCCCACTTGAGAAGAAAAAGCAGTGGATTTTCTAGGGGTGCTTCAATGTACAGAGGGGTCACAAGGCACCATCAACATGGAAGATGGCAAGCAAGGATAGGCAGAGTTGCTGGCAACAAGGACCTTTACCTTGGCACCTTCAGCACTCAAGAGGAGGCAGCAGAGGCATATGATGTAGCAGCAATCAAATTCCGTGGCTCCAATGCAGTTACAAACTTTGACATATCAAGATACGATGTGGAAAGGATCATAGCCAGTAACACTTTGCTTGCTGGGGAGCTAGCTAGGAGAAACAACAAAGATCATAATAGCATTGAACATGAACCACCCATATGTGAGGCCATTCAGTACAACAACAACAACAATGTGGAAGCAGTTCAAGCTAGAAACAACAACAACAACAATGAGGATTCAAACTGGAAGATGGTTTTGTACAACAATGGCTGTGATGATGATCTGATTGGGATTGAAGGGCAGCAGCAACCACTAATGGATGAGGAATGTAGCAAGATTGCAAACCATTTTTCAAACCCTTCTTCACATGTGACTAGCCTAAGCAGCTCAAGAGAAGCTAGCCCTGATAAGATAATGGGTCCCTCATCATCAATGCTGTTTCCAAAGGCTCTTCAACTTGAACCAAAGATGGTTCTTAACAACCACCCCTTAACTACCAGTGGTGGTGTTGTTGGTTCTTGGTTCCCTTCTCAAATGAGGCCAGCTTCTGCTGCTGCTATCTCTTTGTCTCACTTGCCTGTTTTTGCTGCTTGGAACGATACCTAG 1884 0.4522 MKWMNSSGNSNMSSHDGNNQSWLGFSLSPHHHHMKFDLPNSNSSSTSSCSSSYGGDHTTAAFHPHQLSVMPLKSDGSLCIMEALTRSHQTQQVMVGSCSSPKLEDFLGGATMGTHEREAMALSLDTMYYPLHRGLVSSEPFRHQSSHPPYYSSLACHGMYQAPPPTIEEEQPKGGAAHDVPHIAEQQEQGIAGFKNWVVEQQQLNNNNNKFGGAVELQSLSLSMSPGSESSCVTAARHENGKSSESAGAVVVMDNSNKKRGLSNKQPVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNTCKKEGQTRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYQAELEDMKNMTRQEYVAHLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDVAAIKFRGSNAVTNFDISRYDVERIIASNTLLAGELARRNNKDHNSIEHEPPICEAIQYNNNNNVEAVQARNNNNNNEDSNWKMVLYNNGCDDDLIGIEGQQQPLMDEECSKIANHFSNPSSHVTSLSSSREASPDKIMGPSSSMLFPKALQLEPKMVLNNHPLTTSGGVVGSWFPSQMRPASAAAISLSHLPVFAAWNDT 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30470g00002 627 SMART rav1_2 282 354 IPR001471 GO:0003700|GO:0006355
Stsc30470g00002 627 SMART rav1_2 384 448 IPR001471 GO:0003700|GO:0006355
Stsc30470g00002 627 FunFam AP2-like ethylene-responsive transcription factor 383 444 - -
Stsc30470g00002 627 ProSiteProfiles AP2/ERF domain profile. 384 442 IPR001471 GO:0003700|GO:0006355
Stsc30470g00002 627 CDD AP2 383 444 IPR001471 GO:0003700|GO:0006355
Stsc30470g00002 627 ProSiteProfiles AP2/ERF domain profile. 282 348 IPR001471 GO:0003700|GO:0006355
Stsc30470g00002 627 Pfam AP2 domain 385 434 IPR001471 GO:0003700|GO:0006355
Stsc30470g00002 627 Pfam AP2 domain 282 340 IPR001471 GO:0003700|GO:0006355
Stsc30470g00002 627 FunFam AP2-like ethylene-responsive transcription factor ANT 281 350 - -
Stsc30470g00002 627 PRINTS Ethylene responsive element binding protein signature 283 294 IPR001471 GO:0003700|GO:0006355
Stsc30470g00002 627 PRINTS Ethylene responsive element binding protein signature 424 444 IPR001471 GO:0003700|GO:0006355
Stsc30470g00002 627 CDD AP2 281 348 IPR001471 GO:0003700|GO:0006355
Stsc30470g00002 627 SUPERFAMILY DNA-binding domain 281 350 IPR016177 GO:0003677
Stsc30470g00002 627 SUPERFAMILY DNA-binding domain 383 444 IPR016177 GO:0003677
Stsc30470g00002 627 Gene3D AP2/ERF domain 281 350 IPR036955 GO:0003700|GO:0006355
Stsc30470g00002 627 Gene3D AP2/ERF domain 384 444 IPR036955 GO:0003700|GO:0006355
Stsc30470g00002 627 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 99 524 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30470g00002 Stsc-Chr30470 18790 22415 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30470g00002 67 467 AP2-EREBP Transcription Factor Family AT4G37750 59.059 1.93e-156 459
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Stsc30470g00002 AP2 1.5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30470g00002 K09285 - gmx:100798179 643.654