Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30470g00001 ATGAATTTGAAGATGGATTCTGATAAAGCGAAGCTCTTTGTTGGGGGTATCTCCCGTGACACCTCCGAGCACGTTCTCAGAGATCACTTCGGCAGGTACGGCGTCGTTTTGGATTGCACCATCTCCTTGGACCGCACTACCCGAACCCCTAGAGGTTTCGGCTTCGTTACTTTTTCCGATCTCTCTGCTGCTGATAAAGCTCTTCAAGACACCCATGTCATCCTCGGCAGAACGGTGGAAGTGAAAAAAGCAATACCAAGAAGTGAGCAGCAACAGCAGCACCAACACCAAAACCAAAACCAAGTACAGAATAGGGGAGCGAGTAACTATAGTTGTAATGACTGTAGCAGTGACAACATTAGGACTAAAAAGATTTTTGTAGGGGGTTTGTCTGCTGNNNNNNNNNNTGAGCGGTTTGGTCGTATAACTGATGTAGTGGTGATGCAGGACAGCGTGACTCATCGGCCTAGGGGATTTGGTTTCATCACTTTTGATTCCGAAGAATCGGTTCAAAATGTTATGGTGAAAAGTTTCCATGATTTGAATGGTAGACAGGTGGAGGTCAAGAGGGCAGTTCCAAAAGAGGGAAACTATGGTTATGATAGTCCTAATAAGTTAAGATACAGGAGTGAAAGAGGAGCCTCTAAAAGTTTTCCTGCTTATAGTCCTAGCTACACAATTCCTGGCTTTGCGCCTCAGCCATGGTATAGTAATGATGGTGTTTATGTCTATGGATCAAGCAACTACGGTTGGTACCCTATGGGTGGCTATGGGAGTAATGGATATGCAGTACCGTCTGATATTTCTCGGAACTACTGGTATGGGCCCATGATAGCCAGTCCTCAGGGATGTCAGGTGCCTTATGCTTTGCCAAATACTGCTTATATGGGTGGTAGGGTTGGATTAGTAGGTAATGTAGTTGGAACTAGAGGGTTCAATGGCATACTTGGGGCTGCAAGAAATATGAAATTTGATCAACCTCTTACTGCCAATGGATTCTTTCCAGGCAATGTGACATTACATCAAGGTGTGAATCAGGATGTAGTCTCTTCAAATTTGAAAGGATCAAATGGTGAAATTCCTATTTGA 1089 0.4399 MNLKMDSDKAKLFVGGISRDTSEHVLRDHFGRYGVVLDCTISLDRTTRTPRGFGFVTFSDLSAADKALQDTHVILGRTVEVKKAIPRSEQQQQHQHQNQNQVQNRGASNYSCNDCSSDNIRTKKIFVGGLSAXXXXERFGRITDVVVMQDSVTHRPRGFGFITFDSEESVQNVMVKSFHDLNGRQVEVKRAVPKEGNYGYDSPNKLRYRSERGASKSFPAYSPSYTIPGFAPQPWYSNDGVYVYGSSNYGWYPMGGYGSNGYAVPSDISRNYWYGPMIASPQGCQVPYALPNTAYMGGRVGLVGNVVGTRGFNGILGAARNMKFDQPLTANGFFPGNVTLHQGVNQDVVSSNLKGSNGEIPI 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30470g00001 362 SUPERFAMILY RNA-binding domain, RBD 6 109 IPR035979 GO:0003676
Stsc30470g00001 362 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 5 289 - -
Stsc30470g00001 362 SMART rrm1_1 124 189 IPR000504 GO:0003723
Stsc30470g00001 362 SMART rrm1_1 11 82 IPR000504 GO:0003723
Stsc30470g00001 362 MobiDBLite consensus disorder prediction 85 110 - -
Stsc30470g00001 362 Gene3D - 2 118 IPR012677 -
Stsc30470g00001 362 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 86 IPR000504 GO:0003723
Stsc30470g00001 362 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 123 193 IPR000504 GO:0003723
Stsc30470g00001 362 SUPERFAMILY RNA-binding domain, RBD 90 203 IPR035979 GO:0003676
Stsc30470g00001 362 Gene3D - 119 195 IPR012677 -
Stsc30470g00001 362 MobiDBLite consensus disorder prediction 90 110 - -
Stsc30470g00001 362 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 79 IPR000504 GO:0003723
Stsc30470g00001 362 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 138 184 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30470g00001 Stsc-Chr30470 8549 10359 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30470g00001 12 212 Eukaryotic Initiation Factors Gene Family AT4G34110 21.891 1.67e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30470g00001 K14411 - gmx:100816822 508.449