Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30466g00011 ATGTCTGTGGCTGCTCCAAGTTCCCTTTTGAAGGTGGAGGAGATACAAGGAAGAGGGAGGGGATTGGTTGCATCACAACCTCTTAAAGGTGGCCAAATTGTCCTTAGAGATTCTCCTATCCTCCTCTATTCTGCATTGCCACTGATCCCGCAGTCCTTATCCTCATCCTCCTCTACCCTAGCCTCCTCCTTCTGCAGTCACTGCTTTAGAACCTTACCATCCTCTTTACAGGGTGATCCTTCATCCTCCTCAGTTTTGTGCCCTTCATGTAGCCATCATCGCTTTTGCAGCTCTAATTGTCTCTCCAAGGCACTGAATTCATCCCATTCTTCTTGGGTATGTCAAGCATTGTCTCACGTCCAAGCCAGCTCTCCACTTCTTGGACAGCCTCTTGAGCTCCAAGTCCAGGCTCAATTTCTGATTGCTGCATACAATCTTGCCAATATCTCCCCCTCGGACTTCCAAATCTTGCTTTCTCTTCATGGTTCTCCTGATGACACTACAATTTCTGCAGCTCAGTTCCTACACCCTCTTATTTCATCCCTCTTCTCAATTGCTCCCATTGGTCTACAGAATGGGTTTTCTTTGGCACTCACCTCTGCACTTCTGGCTAAGGACAAGCACAATGCCTTTGGCTTGATGCAGCCAGTTTCTATTGATGATGGCCAGAGGTCTGTTAGAGCTTATGGTATCTACCCCTATGCCTCCTTTTTTAATCATGATTGCCTTCCCAATGCCTGCAGATTTGATTATGTGGACAATAATTCATCAGATGGTAGTCATAATACTGACATTATTGTTAGGATGATTCATGATGTTCCCCGAGGCAGGGAGATCTGTTTGAGTTATTTCCCTGTCAATGAAAACTATGCTAGCAGGCAGAAGAGATTGAAGGAAGACTATGGCTTCACCTGTAATTGTGATCGGTGTNNNNNNNNNNTGATGAGACTATCGAAGAAGATAATGGAGAGGATGCAGAAGAGGTTATGGATGAGGAGGATCAATATGAAAACATGGCAGCGTCAGATATCGACAATAATAATGATTTCCCGCATGCATATTTCTTTTTAA 1071 0.4426 MSVAAPSSLLKVEEIQGRGRGLVASQPLKGGQIVLRDSPILLYSALPLIPQSLSSSSSTLASSFCSHCFRTLPSSLQGDPSSSSVLCPSCSHHRFCSSNCLSKALNSSHSSWVCQALSHVQASSPLLGQPLELQVQAQFLIAAYNLANISPSDFQILLSLHGSPDDTTISAAQFLHPLISSLFSIAPIGLQNGFSLALTSALLAKDKHNAFGLMQPVSIDDGQRSVRAYGIYPYASFFNHDCLPNACRFDYVDNNSSDGSHNTDIIVRMIHDVPRGREICLSYFPVNENYASRQKRLKEDYGFTCNCDRCXXXXMRLSKKIMERMQKRLWMRRINMKTWQRQISTIIMISRMHISF 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30466g00011 356 Pfam SET domain 19 283 IPR001214 GO:0005515
Stsc30466g00011 356 CDD SET_SMYD 208 310 - -
Stsc30466g00011 356 Gene3D - 124 210 - -
Stsc30466g00011 356 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ASHR2 1 311 IPR044238 -
Stsc30466g00011 356 SMART set_7 8 290 IPR001214 GO:0005515
Stsc30466g00011 356 Gene3D - 64 123 - -
Stsc30466g00011 356 SUPERFAMILY SET domain 10 310 IPR046341 -
Stsc30466g00011 356 Gene3D SET domain 21 310 IPR046341 -
Stsc30466g00011 356 ProSiteProfiles SET domain profile. 8 284 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30466g00011 Stsc-Chr30466 49629 52966 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Stsc30466g00011 SET 6.4e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30466g00011 - - gmx:100783406 476.092