Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30466g00003 ATGGTTGCCCAACACCCTCACCCTCAGCCTCAGACTCAGCCACAGCCACAGCAACCTCCTTCCTCTGCACAAGACGAGGCTTTGAAGAGGAACACCGATTGCGTCTACTTTCTTGCATCTCCTTTGACATGCAAAAAGGGAAATGAATGTGAGTACCGCCATAGTGAGTATGCTCGGGTAAATCCTAGGGATTGCTGGTATTGGTTGAATGGCAATTGCTTGAACCCCAAATGTGCATTCCGTCATCCGCCACTTGATGGCTTGTTGGGTTCACCGGCAGCCACTGCTCCTGGGCCATCTGTTCCCTCGCCACAGATTGCAACGACATCTGCAGCCCCTACGACACCGTATAATTCTACTAAACAAGCTGTCCCATGTATTTTCTTTCAAAAGGGCCTTTGCTTAAAAGGTGATAGATGTGCATTCTTGCATGGACCAAATCCTACTGCTGGTAACAAAGCTGTTAATCAGGGCCCAGTGACTAGCCAGGGTACTGAGACTCCAACTTTTAAGAAGCCATTTGGCAGTGGTGATAAATATGCGCAAGAAACGAGAAGCTCCCAAGGAAACATTACAAAATTAGTTGGAGGTCCTGAAATTAAACCTTCTCAAAAGGTTGAAACTGCCCCACTAAGAAATAATTTCGAATTGGAGAAGCGTGTGGCACCACCATCTGTAGGATTTGATGATGAGGCTTCAAGATTTAAAATGAGAAGTATTTCCCCAGTGGCTAACGGGCCTACTGCTGTCCATTCTAATCGATTGCATCAAGTTCGTGTGCCTGATGATCATGGTTTCCACAATGGCAAGGATAGTGATGAGTTCCTCAGAGAATCTTCTCCTGGATTTGATGTTCTTGTAGCTGATGAGCTTAGAAATTCTGATTACTACCATGGGGAAGATGAATTTGGTAACACAAGAGGTCCAGATGAAAGGAACTTGGACTCTTTGAATCAGTATGACTTGGGGCATTCTGCTGATTATGGTTTAGCTCGTGATATTGATCAAGAAAGATTTCGTGTGCCCCAACCGTACGACTCATATGATCATATGCAAGAGCCGTATGCTTGGGAGCAGCATAGAAAGGCCCCGGGCCATTTAGAAAGGAGGCCTCACCGCAGATCTGATAGTCCTGAGAATGTAGAGGTCTCAGATCTCCGACATCGTTTGTCTAAGCGCCGGAGGGTCAATGGTTTGAAATCTGTTGTCTCTAATGACTTTGATAGCCATGGTGAGCAACAAAGTCACCGGTTCTCCTCTAGGAAGGATTCACACCAGTTACCTTTGAATGATCGCTTCCGAGGCAGAATAAAACTTCCAGCAAGTGGCGCTGATGATCACCCAGAGAGAGAATCAGACAGAGGAAGAATTAGGAGCAGATTGTCAACTGGAAGGTTGCCAGTCCCGCACCAAGGAAGGCTCCAAGACAGAATTAGAGGAAGGGTGCAGGATGATGAGAGGAGAAACTTCAGGGAACGATCAACGGGGAGAGAAGTAGTAGCAGGGGACAGAAGAAGTGATTTTTCCGGGCCTAAAAGCCTTGCTCAACTTAAGAATGGGAGGAGCTCTGAGTATTCACTGGGAAAGAGAAAGAGTCTAACGGAACAGTCCCAATCAGAGGATGATTTTCAGTTTGACGGTCCGAAACCTCTGAGTGAAATTTTGAAGGAGAAGAGAAAAGTTAAAGCTGGTGTATCCTCACAGAGTGAAATTGTCCATAGCTCTGATGATCCAGCTGTGACAAACACAGAAAATGGAGCATTGCATGAGACCAAGGAAAGTGCCAAGACTCACTCACTAGTTAATGAAGAAGAAACCAAGCCTCAGGACAGTGAAACAGCTGGAAGGGAGATCGATAACAATGATGGAAATCGTGATCAATCATATGAGGATGGAATGATCTATGATGAAGCCGCAGAGGACCAGGAGTATGAAGGCGATGACCAAGGAGGTGGGGAGTATGAATATGAGCAAGGTGAGGAGGGGGAATATGATTATGAACAAGTTGAAGAGGGAGAAAATCCAGAGCAAGAATACATGGAAGATGAAGATGGGGATGACTTTGCTAAGAAGATTGGTGTGATGACTACATAA 2094 0.4575 MVAQHPHPQPQTQPQPQQPPSSAQDEALKRNTDCVYFLASPLTCKKGNECEYRHSEYARVNPRDCWYWLNGNCLNPKCAFRHPPLDGLLGSPAATAPGPSVPSPQIATTSAAPTTPYNSTKQAVPCIFFQKGLCLKGDRCAFLHGPNPTAGNKAVNQGPVTSQGTETPTFKKPFGSGDKYAQETRSSQGNITKLVGGPEIKPSQKVETAPLRNNFELEKRVAPPSVGFDDEASRFKMRSISPVANGPTAVHSNRLHQVRVPDDHGFHNGKDSDEFLRESSPGFDVLVADELRNSDYYHGEDEFGNTRGPDERNLDSLNQYDLGHSADYGLARDIDQERFRVPQPYDSYDHMQEPYAWEQHRKAPGHLERRPHRRSDSPENVEVSDLRHRLSKRRRVNGLKSVVSNDFDSHGEQQSHRFSSRKDSHQLPLNDRFRGRIKLPASGADDHPERESDRGRIRSRLSTGRLPVPHQGRLQDRIRGRVQDDERRNFRERSTGREVVAGDRRSDFSGPKSLAQLKNGRSSEYSLGKRKSLTEQSQSEDDFQFDGPKPLSEILKEKRKVKAGVSSQSEIVHSSDDPAVTNTENGALHETKESAKTHSLVNEEETKPQDSETAGREIDNNDGNRDQSYEDGMIYDEAAEDQEYEGDDQGGGEYEYEQGEEGEYDYEQVEEGENPEQEYMEDEDGDDFAKKIGVMTT 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30466g00003 697 Gene3D - 20 85 - -
Stsc30466g00003 697 Gene3D - 114 179 - -
Stsc30466g00003 697 ProSiteProfiles Zinc finger C3H1-type profile. 28 57 IPR000571 GO:0046872
Stsc30466g00003 697 MobiDBLite consensus disorder prediction 101 117 - -
Stsc30466g00003 697 MobiDBLite consensus disorder prediction 410 460 - -
Stsc30466g00003 697 ProSiteProfiles Zinc finger C3H1-type profile. 59 85 IPR000571 GO:0046872
Stsc30466g00003 697 MobiDBLite consensus disorder prediction 512 543 - -
Stsc30466g00003 697 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 124 146 IPR000571 GO:0046872
Stsc30466g00003 697 FunFam Zinc finger CCCH domain-containing protein 17 22 85 - -
Stsc30466g00003 697 MobiDBLite consensus disorder prediction 152 170 - -
Stsc30466g00003 697 Pfam Zinc-finger containing family 29 83 IPR041686 -
Stsc30466g00003 697 MobiDBLite consensus disorder prediction 152 175 - -
Stsc30466g00003 697 MobiDBLite consensus disorder prediction 567 588 - -
Stsc30466g00003 697 SUPERFAMILY CCCH zinc finger 121 145 IPR036855 GO:0046872
Stsc30466g00003 697 MobiDBLite consensus disorder prediction 1 26 - -
Stsc30466g00003 697 MobiDBLite consensus disorder prediction 91 117 - -
Stsc30466g00003 697 MobiDBLite consensus disorder prediction 362 389 - -
Stsc30466g00003 697 ProSiteProfiles Zinc finger C3H1-type profile. 120 147 IPR000571 GO:0046872
Stsc30466g00003 697 PANTHER ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING 25 695 - -
Stsc30466g00003 697 MobiDBLite consensus disorder prediction 633 683 - -
Stsc30466g00003 697 MobiDBLite consensus disorder prediction 589 632 - -
Stsc30466g00003 697 MobiDBLite consensus disorder prediction 472 505 - -
Stsc30466g00003 697 MobiDBLite consensus disorder prediction 298 317 - -
Stsc30466g00003 697 MobiDBLite consensus disorder prediction 401 697 - -
Stsc30466g00003 697 SMART c3hfinal6 29 56 IPR000571 GO:0046872
Stsc30466g00003 697 SMART c3hfinal6 120 146 IPR000571 GO:0046872
Stsc30466g00003 697 SMART c3hfinal6 61 84 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30466g00003 Stsc-Chr30466 17794 21469 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Stsc30466g00003 zf-CCCH_3 7.6e-12 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30466g00003 - - gmx:100787836 857.44