Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30465g00006 ATGCTGTTCAATGGACCGAGCTCCCCAGAGTTTATCAGCAGAGAGACAAGGAGGTTCTCATTGGAGAGGCTAAGAAATGTTGGGAAAAACGAAACACGCATTGTCCCTCCTGAGATAGCTGCTAGGAACTCGGCATCGCATGCTTTAGGCAATCATAGGGTTAGGCAAAAGCAAACAGAAGATAAATGTGGAAATGGCACAAGCCATTGGCAAGTTTCAAAAGGGGAAAATGAAATACGAACAGGGTCTTTCAGGCATGATCCGGATGACAATGTGTTGTTCCAAAGGGACTTGTCCCCTAGAAACCTTGTAAGGTCCTTGTCTGCTCCTGTATCAATATCAGGAACATCGTTTGGGAAGCTGCTTTTAGAGGACCGCCATGTTTTAACCGGTGCACAAATTCGGAGGAAGCTTGAAGCTGTTGAAACTATTTCTGTTGACATTAAAAAACGGAAAAAGGATAGATTCAATATTAAAGAGAAAGTCTCCCATTTTAGATACAGCCTTGGTCTAAGAGGGAAGCTTTTCGGCAAAAGGATTCAATCAATGGTAGAATCACATGGCAGTGAATATGGTTCCATGGTAAGAGATGTCACCAGTGGACCGACAGTTCTATTGACTTATGGCGAGAGGCATGAGAACTCCACTGAGGTACCTCCTAGTCCTGCATCTGTGTGCAGCAGTGTTCATGAAGAATTTTGGAAGCGAGCTGAATACTTAAGTCCACTATCAACTCCAGATATTCCTTCGAGAGACGACAACTTTGTTCCCATGGTTTTCAGAGATATCAGCTCTGGTTTGAGTGAGCTAAGGAGACAACTCAATCAACTCGAGTCCAATGGTTCCGACAACATCACAACAAAACAGGAGCCTCTTGAGTCCGAGGTAGTTCAACTAGAGGATCCAGCAGAATCTTTTATAAGAGATCTACTGGTTGCCTCTGGTCTGTACTTCGGTTCATGGGATAAATCTTTATTAGGAGGAGACACAATAGCAAAGCCTATCAGCAACTTGGTATTCAAAGAAGTCGAAGCATCTCGAATGAAATCAACCAACGAGAAGAATGATGAAGATTCTATAAAGGATCGGAACGAGAAAATGATAAACAAGAAGGTTTTGGTTGATTTGTTGAATGAGGCACTTTCGGTTGTTCTTGGACCATCTCTGACATTATCAAGATTCAGAAGGAAATTAAGCAACACTTCCATGATGATGGCACCACCTCGCGGAAAAGAATTGTTGAAATCAGTGTGGGAAATCATCAGTGCTTCTCTGTATCCGCAATCCGATGAAATATATCCTTATTCTCTTGATGATTTGGTGGCTCAACATTTGGGGTCAATCCCTTGGTCTGGATTAGTATCAGAAGAGATCAATGTATTGGAAAGAGATATAGAATGTATGATAACCAATGATCTGGTTGAAGAACTCACAAAAGACATGCTCATTGGTCTTATCACCAAGAACTCGACTAACTCGACCTGA 1485 0.4222 MLFNGPSSPEFISRETRRFSLERLRNVGKNETRIVPPEIAARNSASHALGNHRVRQKQTEDKCGNGTSHWQVSKGENEIRTGSFRHDPDDNVLFQRDLSPRNLVRSLSAPVSISGTSFGKLLLEDRHVLTGAQIRRKLEAVETISVDIKKRKKDRFNIKEKVSHFRYSLGLRGKLFGKRIQSMVESHGSEYGSMVRDVTSGPTVLLTYGERHENSTEVPPSPASVCSSVHEEFWKRAEYLSPLSTPDIPSRDDNFVPMVFRDISSGLSELRRQLNQLESNGSDNITTKQEPLESEVVQLEDPAESFIRDLLVASGLYFGSWDKSLLGGDTIAKPISNLVFKEVEASRMKSTNEKNDEDSIKDRNEKMINKKVLVDLLNEALSVVLGPSLTLSRFRRKLSNTSMMMAPPRGKELLKSVWEIISASLYPQSDEIYPYSLDDLVAQHLGSIPWSGLVSEEINVLERDIECMITNDLVEELTKDMLIGLITKNSTNST 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30465g00006 494 Coils Coil 260 280 - -
Stsc30465g00006 494 MobiDBLite consensus disorder prediction 63 78 - -
Stsc30465g00006 494 Pfam Domain of unknown function (DUF4378) 305 476 IPR025486 -
Stsc30465g00006 494 MobiDBLite consensus disorder prediction 48 86 - -
Stsc30465g00006 494 PANTHER RB1-INDUCIBLE COILED-COIL PROTEIN 3 482 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30465g00006 Stsc-Chr30465 56759 59267 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30465g00006 4 481 TRM (TON1 Recruiting Motif) Superfamily AT2G17550 45.436 6.53e-112 345
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30465g00006 - - adu:107487403 863.988