Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30464g00004 ATGTACCCTTGCAGCCAAGAGAGTAGTTCTCTGCTACTCCTGATGGGTGCTCCTAAGCAGAAATGGACATCAGAAGAGGAAGCAGCTCTTAAAGCTGGAGTTGTCAAGCATGGGGTTGGTAAATGGCGTACAATACTAAAGGATCCAGAATTTAGTGGTGTTTTGTATCTGCGGTCCAATGTGGATCTCAAGGATAAATGGAGAAATCTGAGTGTGATGGCAAATGGATGGAGTTCCAGGGAAAAGTCTAGATTGTCTATCAGAAGGGTGCATCAAGCCCCAAAACACGACGAGAACTCCTTGGCTACCAGTCCTCCTATTCAAAGTGATGAAGATATTTCTGATGTTAAGCCTCTTCAAGTTTCTAGTTCTAGAGATGTGGTGCCATTTTCTGGTCCAAAAAGGTCTATTGTAAGACTGGATAATCTTATAATGGAAGCAATAACTACCTTGAAGGAAACTGGTGGTTCTAATAAGACAACTATTGCAGCTTTCATAGAGGTAAAACGCAGGTATAGAATTGCACCTATTCCAGCATATTCTGACAGAAGAAGAAGCTCAAGCTTGTTGTTAACTGATGGGAGGCAGAAAGCCCCTTTGAGAGGTGACAAGGAAGAGACCAATGTCCTTACAAAGTCTCAGATAGATTTAGAATTAGCAAAGATAAGGTCTATGTCTGCACAAGAGGCAGCTGCAGTTGCTGCTCGAGCAGTTGCAGAAGCAGAAGCTGCCATAGCAGAAGCTGAAGAGGCAGCAAGAGAGGCAGAGGCTGCAGAAGCTGATGCAGAGGCGGCACAAGCTTTTGCAGATGCTGCTATGAAAACACTGAAAGGGCGAAACACCCCTAAGATGATCCATGCTTGA 864 0.4433 MYPCSQESSSLLLLMGAPKQKWTSEEEAALKAGVVKHGVGKWRTILKDPEFSGVLYLRSNVDLKDKWRNLSVMANGWSSREKSRLSIRRVHQAPKHDENSLATSPPIQSDEDISDVKPLQVSSSRDVVPFSGPKRSIVRLDNLIMEAITTLKETGGSNKTTIAAFIEVKRRYRIAPIPAYSDRRRSSSLLLTDGRQKAPLRGDKEETNVLTKSQIDLELAKIRSMSAQEAAAVAARAVAEAEAAIAEAEEAAREAEAAEADAEAAQAFADAAMKTLKGRNTPKMIHA 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30464g00004 287 SMART sant 18 73 IPR001005 -
Stsc30464g00004 287 MobiDBLite consensus disorder prediction 97 118 - -
Stsc30464g00004 287 Gene3D - 16 73 - -
Stsc30464g00004 287 Pfam Myb-like DNA-binding domain 19 70 IPR001005 -
Stsc30464g00004 287 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 19 47 IPR017930 -
Stsc30464g00004 287 Coils Coil 231 268 - -
Stsc30464g00004 287 CDD SANT_TRF 20 70 - -
Stsc30464g00004 287 PANTHER SINGLE MYB HISTONE 4 15 285 IPR044597 GO:0003691
Stsc30464g00004 287 MobiDBLite consensus disorder prediction 88 118 - -
Stsc30464g00004 287 ProSiteProfiles Myb-like domain profile. 19 71 IPR001005 -
Stsc30464g00004 287 SUPERFAMILY "Winged helix" DNA-binding domain 133 172 IPR036390 -
Stsc30464g00004 287 FunFam Telomere repeat-binding factor 1 16 72 - -
Stsc30464g00004 287 SUPERFAMILY Homeodomain-like 16 85 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30464g00004 Stsc-Chr30464 13936 17219 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30464g00004 15 285 Single Myb Histone (SMH) Gene Family AT1G49950 59.150 6.45e-80 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Stsc30464g00004 Myb_DNA-binding 1.7e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30464g00004 K09422 - gmx:100780698 335.109